<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16515

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMPLMMDEEMDMDDLFGDGGGLSLPSRPPSTELRQRIDELRAGGCCQGIAWSKWGCIASITSNGASLELRNLRCHPTDGSWGLSEPTVTPGFAPPLDGGLLKHISWSPTGSDLAVIDSAGRVTILSVFTSLNKPSLSRSAQADPADDLHGVVGSYWLNLAPYPPQRPIILHGPAIKEGSNYRYEASQAPVLGPCHPVHSKSAFVCVTTNGLLRVLLPLANNKWHESHTELESGTLLVAFATASMQLRTVRALIDWNLPKIDKVPPAHLPLNPTVRTKHLSGTSWVPDVPPGPLNTSHTDSHTDSHTDSSMTRLSHLEFLPQCADANSTVIPPTIVAIRSSLPSLASHYNQDVHTTVDRWEIRDRPQTVHPAFEQLSSRRNSTGHPPQPIVYLKKLESFTVNKVAVGMESMNNGRVVVFAYSDSSMEYRDRMDMTETFNDGNLERVWHLSQIGFSYTEDEPCLQVALSPTYCSAVQIRTDGKVKWKQLDYHLGSIGTSMEDPIYSAAIAALSLSCATTVMKSINFDDIIATASKHATPQFAYDWLVELSRIMKVHADYSEETHHDVLVRNTTIQLCLSIQNSLGFKGEFHPRTFSGKLAWLVLQLRSVVVLTTMAANINFPGGPNAGEKTSPLDDPEIINSLAGSVRWVLDLVAWLIDTLLALHTTAPADITLTKISTLSLPALLSHLMKTNNISLHLFISSPTRGFLTAICRRLQHLDFIARKAITSPSAGSSPATLTPALRAAYIQIGLLNDKAILQIKTLETLLSSLTALIRSSYASHTPPLTGSPAAERTRNNLETKMLFGGSIPDALKSVIVELFRPEGLLAAVQEEIEPAKLFFADFTMLEVDEDRASIERRRKLNTTMDGFRKGWLANPVTKADATEASAREFRGLATGSGRQGARWRRCARCAAVMEDIIPQRQALQWLVMQQRRCYCSGYWDTLAPGARVA
Length948
PositionTail
OrganismDiplocarpon rosae
KingdomFungi
Lineage
Aromaticity0.07
Grand average of hydropathy-0.143
Instability index45.17
Isoelectric point6.67
Molecular weight104056.63
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16515
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.70|      22|      53|      42|      63|       1
---------------------------------------------------------------------------
   42-   63 (46.93/29.35)	GGCCQGIAWSKWGC.IAS.ITSNG
   97-  119 (36.46/21.11)	GGLLKHISWSPTGSdLAV.IDSAG
  460-  479 (26.31/13.12)	..CLQ.VALSPTYC.SAVqIRTDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.71|      42|      45|     594|     637|       2
---------------------------------------------------------------------------
  594-  637 (63.42/46.48)	GKLAWlVLQLRSVVVLTTMAANINFPGGPNAgEKTSPLDDPEII
  642-  683 (69.29/41.76)	GSVRW.VLDLVAWLIDTLLALHTTAPADITL.TKISTLSLPALL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     229.27|      52|      53|     291|     343|       3
---------------------------------------------------------------------------
  185-  217 (28.80/12.08)	........................S....QAPVLGPCHPVH.SKsafV..CVTTNGLLRVLLP.L
  218-  269 (56.57/31.94)	ANNKWH.ESHT..ELESGTLLVAFAtasmQLRTVRALIDWNlPK...IdkVPP......AHLP.L
  291-  343 (82.92/54.81)	PLNTSHtDSHT..DSHTDSSMTRLS....HLEFLPQCADAN.ST...V..IPPTIVAIRSSLPSL
  350-  397 (60.98/34.77)	.......DVHTtvDRWEIRDRPQTV....HPAFEQLSSRRN.ST...G..HPPQPIVYLKKLESF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.55|      11|      45|     446|     457|       4
---------------------------------------------------------------------------
  446-  457 (17.80/16.32)	HLSQIGFSYtED
  489-  499 (21.75/14.19)	HLGSIGTSM.ED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.30|      39|      45|     818|     857|       5
---------------------------------------------------------------------------
  818-  857 (59.39/37.02)	FRpEGLLAAVQEEIEPAKLFFADFTMLEVDEDRASIERRR
  866-  904 (67.91/37.99)	FR.KGWLANPVTKADATEASAREFRGLATGSGRQGARWRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.19|      12|      58|      17|      28|       6
---------------------------------------------------------------------------
   17-   28 (24.94/16.22)	DGG.GLSLPSRPP
   77-   89 (19.25/10.47)	DGSwGLSEPTVTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.92|      22|      51|     713|     734|       7
---------------------------------------------------------------------------
  713-  734 (38.15/21.40)	LQHLDFIARKAITS..PSAGSSPA
  765-  788 (32.76/17.31)	LSSLTALIRSSYAShtPPLTGSPA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16515 with Med16 domain of Kingdom Fungi
Unable to open file!