<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16512

Description Mediator of RNA polymerase II transcription subunit 5
SequenceMHPSFIVWQQFRDRCIETRLDVELFTTYVELLKTQEPLPASQIAQIFLAPREDNDNALDPRVARYVQTLLSLELFNVPTLLRGLWKVSSFRLQEEGRVQDKETENKKAEGGVDGKAGKVWLNSYTTEETMFYRITKYISSGAALRDLQETVELINACISWMETVISATHAAHQMLNLAPTRAAEMAAQHMALGTLVVSVVENTQVQHALGKRAVPKSVRGHLSKALGGFVPLVLQSSPQIAGRLEIFRTETLAAFESPEAKEPKGEADKDIEEILQGGLELRVDSMVVEEIPVVNTRIGLYVYLNSLGDIRSTIIDLILAAFDVLANATFRNERAESISILRSFLINKIPLLLSNLSSSLFPPLTSEYCITEALSQVDTTAFPTLSNMFDETSNGNMFSDSVRQDFCFACCLHGLIEESSIEQLLGDIPMQSLPAGGRYVKDELVQQCLSDPERAEGLIDELQNMDGNVGAVSQAITEVIARLCSNKETMSLKSLCSRLVQKSSALDVMLLFDKPTAFLQPICDLLDNWRYDEDQGEYQPVYEEFGSILLLVLSFTYRYNLSTIDLGIRSPESFVAKLLTRGHLSRKMEDMSDSEKQHLTGWIQGLFDNESGGLGDELMSSCPPQDFYLLVPTLFHETVLACSTRNLSDETLKGGLEYLVDTFLLPSLVPGITWLACHLWESRGDANAVLQILSALITNPASISNNTEASQMLNSILNIVAKNLEQSLRWLQRAEPSRQDVEPLLKTLRGNLGWERRGASDHTELESWSGSTGGGLIVSLKSTIVNLIQWGLNPALNSNPANFTNRQILVGVKMLGAKRVLSAIIDEVRSQTETGHGSVALDAACALVCAPDAASWDVGISIDVLGASAMPPQQRRLNLREALRLEAENAPKLHKTEPFLAETIVRLYRKVEAQLTMSQQAIDALGDLNSAIEAAGIDALAAEGLGGDAADLLGDPHGDLMQGLIGGGADDLLGFGSTGDLGDGLGF
Length987
PositionTail
OrganismDiplocarpon rosae
KingdomFungi
Lineage
Aromaticity0.06
Grand average of hydropathy-0.045
Instability index50.08
Isoelectric point4.75
Molecular weight108144.90
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16512
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     626.09|     150|     151|     579|     729|       3
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  219-  360 (118.52/63.91)	.RGHLSKA...................L............................GG..FVPLVLQSS..PQIAGRLEIfrtETLaaF.............ESPEA..KEPK.GEADkdieEILQGGL...ELRVDSMVVEE.IPVVnTRIGLYV...Y..lNSLGDIRST...................IidLILAAFdvLAN.ATFRNErAESI.SILR.SFLiNkipLLLS..NLSSSL.
  399-  577 (80.55/41.01)	.............SDSVRQDfcFACC.LHGLIEES.....SieqllgdipmqslpaGGryVKDELVQQClsDPERAEGLI...DEL..QNmdgnvgavsqaiTEVIArlCSNKeTMSL....KSLCSRLvqkSSALDVMLLFDKPTAF.LQPICDLldnWrydEDQGEYQPVyeefgsilllvlsftyrynL..STIDLG..IRSPESFVAK................................
  580-  729 (250.50/141.10)	TRGHLSRK.MEDMSDSEKQH..LTGW.IQGLFDNE.....S...............GG..LGDELMSSC..PPQDFYLLV...PTL..FH............ETVLA..CSTR.NLSD....ETLKGGL...EYLVDTFLLPSLVPGI.TWLACHL...W...ESRGDANAV...................L..QILSAL..ITNPASISNN.TEAS.QMLN.SIL.N...IVAK..NLEQSLR
  732-  884 (176.51/100.05)	QRAEPSRQdVEPLLKTLRGN..L.GWeRRGASDHTeleswS...............GS..TGGGLIVSL..KSTIVNLIQ...WGL................NPALN..SNPA.NFTN....RQILVGV...KMLGAKRVLSAIIDEV......RS...Q...TETGHGSVA...................L..DAACAL..VCAPDAASWD.VGISiDVLGaSAM.P...PQQRrlNLREALR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16512 with Med5 domain of Kingdom Fungi
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