<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16509

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMASIPGEFPISLRSWPILTSNNALPSIIQRINVERGGFQNITEESLRQEIVEEGLDNEDKASSSSEDAEEADRAKELAVARDELTLQIEGAHQNAMLALDFISLLLSKDAPIQAGLSLSPDLQQIVGTKTLGADKLATSRITDAQKQDNKNVAKGWKIQHLNQTVDSILASATRLEKEIEHETKYWEQVLAVSEKGWAICRLPNQKHILGVRFGFSEASPAFKSRSLAALQRNADGTISLGQGLADAEPRTLRIRIQAKGEYTGSSSIPKAVPPDAPIESLILQARNTIFSEELWQELNRESRTLEPVQARDNTLIFQLSATKTMVLDLIPLEEQRIRHSGVDGPLAESLLLALNLLLSYAHRKALERRSQLPPPISSEKRPNPPLSLFRLLIARARHQETIFQLHALFRPLLDVLRAISLAHPPTYNLVPKTWPATPNSRLSVAERTILALTTRLEAIVTFTITPSTTLTIHARTHCQPALYTQFTLSLSPSSPLNATFPPVQRLEFISVLQANVMSIILQSNIVLAPSGHQSQIVTAPSF
Length542
PositionHead
OrganismDiplocarpon rosae
KingdomFungi
Lineage
Aromaticity0.05
Grand average of hydropathy-0.176
Instability index54.65
Isoelectric point6.66
Molecular weight59867.72
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16509
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     190.89|      61|     110|     235|     298|       1
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  235-  298 (100.10/55.85)	DG......TISLGQGLADAEPRTLRIRIQAKGEYtgsSSIPKAVPPDAPIESLILQARN..TIFS.EELWQEL
  343-  412 (90.79/44.61)	DGplaeslLLALNLLLSYAHRKALERRSQLPPPI...SSEKRPNPPLSLFRLLIARARHqeTIFQlHALFRPL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.92|      36|      38|     122|     158|       2
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  122-  158 (55.87/46.18)	LQQIVGTKTLGADKLaTSRITDAQKQDNKNVA...KGWKI
  161-  199 (56.05/41.22)	LNQTVDSILASATRL.EKEIEHETKYWEQVLAvseKGWAI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.77|      29|     227|      73|     104|       4
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   73-  104 (42.22/38.40)	RAKELAVARDE.LTLQIEGAHqnaMLALDFISL
  303-  332 (44.55/31.34)	RTLEPVQARDNtLIFQLSATK...TMVLDLIPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.05|      10|      25|     461|     470|       6
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  461-  470 (17.71/ 7.55)	TFTITPSTTL
  487-  496 (17.34/ 7.26)	TLSLSPSSPL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16509 with Med17 domain of Kingdom Fungi
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