<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16504

Description Mediator of RNA polymerase II transcription subunit 16
SequenceMPLMMDEEMDMDDLFGDGGGLSLPSRPPSTELRQRIDELRAGGCCQGIAWSKWGCIASITSNGASLELRNLRCHPTDGSWGLSEPTVTPGFAPPLDGGLLKHISWSPTGSDLAVIDSAGRVTILSVFTSLNKPSLSRSAQADPADDLHGVVGSYWLNLAPYPPQRPIILHGPAIKEGSNYRYEASQAPVLGPCHPVHSKSAFVCVTTNGLLRVLLPLANNKWHESHTELESIVSPSSDLLTLLTNSGGTLLVAFATASMQLRTVRALIDWNLPKIDKVPPAHLPLNPTVRTKHLSGTSWVPDVPSGPLNTSHTDASTTRLSHLEFLPQCADANNIIIPPTIVAIRSSLPSLASHFTQDVHTTVDRWEIRDRPQTIHPAFEQLSSRRNSTGHPPQPVVYLKKLESFTVNKVAVGMESMNNGRVVVFAYSDSSLEYRDRMDMVETFNDGNLERVWHLSQIGFSYTEDEPCLQVALSPTFCSAVQIRTDGRVKWKQLDYHLGSIGTGMEDPIYSAAIAALSLSCATTVMKSINFDDIIATASKHATPQFAYDWLVELSRIMKVHADYSEETHHDVLVRNTTIQLCLSIQNSLGFKGEFHPRTFSGKLAWLVLQLRSVVVLTTMAANINFPGGPNAGEKTSPLDDPGSLADPVPVPTSTIAT
Length658
PositionTail
OrganismDiplocarpon rosae
KingdomFungi
Lineage
Aromaticity0.07
Grand average of hydropathy-0.138
Instability index42.43
Isoelectric point5.90
Molecular weight71691.62
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16504
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     180.11|      42|     113|     468|     509|       1
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  468-  509 (72.87/49.05)	CLQVALSPTFCSAVQIRT.DGRVKWKQLDYH.LGSIGTGMEDPI
  521-  559 (46.46/28.57)	CATTVMKSINFDDI.IAT.ASKHATPQFAYDwLVELSRIMK...
  582-  624 (60.79/39.68)	CLSIQNSLGFKGEFHPRTfSGKLAWLVLQLR.SVVVLTTMAANI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     259.37|      71|     227|      91|     168|       2
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   50-  104 (70.84/39.42)	WSKWGC.IASITSNGaSLELRNLRCHPTDGSWGLSEPT..............................vtpgfappLDGGL....LKHIS
  105-  166 (94.10/50.80)	WSPTGSDLAVIDSAG.RVTILSVFTSLNKPSLSRSAQADPADDLHGVVGSY.WlNLAPY...PPQR.P......................
  222-  298 (94.43/46.69)	WHESHTELESIVSPS.S.DLLTLLT..NSGGTLLVAFATASMQLRTVRALIdW.NLPKIdkvPPAHlP........LNPTVrtkhLSGTS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.51|      14|     426|       7|      21|       5
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    7-   21 (23.12/20.89)	EEMDMDDLFGDgGGL
  436-  449 (27.39/18.68)	DRMDMVETFND.GNL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16504 with Med16 domain of Kingdom Fungi
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