<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16494

Description Mediator of RNA polymerase II transcription subunit 17 (Fragment)
SequenceSLSPDLQQIVGTKTLGADKLATSRITDAQKQDNKNVAKGWKIQHLNQTVESILASATRLEKEIEHETKYWEQVLAVSEKGWAICRLPNQKHILGVRFGFSEASPAFKSRSLAALQRNANGTISLGQGLADAEPRTLRVRIQAEGEYTGSSSIPKAVPQDAPIESLILQARNTIFSEELWQELNRESRTLEPVQARNNTLIFQLSATKTMVLDLIPLEEQRIAHSGVDGPLAESLFLALSLLLSYAHRKALERRSQLPPPISSEKRPNPSLSLFRLLIARARHQEIISQLHALFRPLLDVLRVISLAHPPTYTLVPKVWPVPPNSRLSVAERTILALTTRLEVIVTFTITPSTTLTIHARTHCQPALHTQFTLSLSPSSPLHAIFPPVQRIELFPVLREYIYHATTSALASLFLSPSPSIITSTWKQTAHSNILHCPVPCASNRNPTAGCTTASQTKQLSLTLRQEPLDANGNGHSITVLRAQWEWARGEQTGAPAMAWTDKSFASAYTRPNPDTFQEEEGRSGKGKRRPTVIQGENFYEWIVPYPCEGLTWEEGEGIMVWTLEQVMLAAGR
Length571
PositionHead
OrganismDiplocarpon rosae
KingdomFungi
Lineage
Aromaticity0.06
Grand average of hydropathy-0.255
Instability index50.54
Isoelectric point9.03
Molecular weight63452.74
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16494
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.82|      17|      24|     158|     174|       1
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  158-  174 (30.82/20.77)	QDAPIESLIL...QARNT..IF
  180-  201 (20.99/11.90)	QELNRESRTLepvQARNNtlIF
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.94|      30|      38|      17|      53|       2
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   17-   47 (48.46/44.53)	ADKLaTSRITDAQKQDNKNVA...KGWKIQHL.NQ
   56-   89 (45.48/24.46)	ATRL.EKEIEHETKYWEQVLAvseKGWAICRLpNQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     212.11|      49|     176|     211|     266|       4
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  211-  259 (79.98/36.21)	LDLIPLEEQRIAHSGVDGPLAESLFL..A.LSLL..LSYAHRKALERRSQL.P.PP
  270-  322 (59.63/32.03)	LSLFRLLIARARHQEIISQL.HALFR..PlLDVLrvISLAHPPTYTLVPKVwPvPP
  390-  438 (72.50/31.87)	IELFPVLREYIYHA.TTSALA.SLFLspS.PSII..TSTWKQTAHSNILHC.P.VP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.35|      12|      23|     345|     358|       5
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  345-  358 (17.79/14.12)	TFTITPSTTLtiHA
  371-  382 (21.57/10.60)	TLSLSPSSPL..HA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.75|      36|     348|     107|     153|       6
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  107-  153 (46.63/64.83)	KSRSLAALQR..NANGTislGQGLAdaeprTLRVRIQ.AEGEYTGSssiP
  456-  494 (56.11/41.55)	KQLSLTLRQEplDANGN...GHSIT.....VLRAQWEwARGEQTGA...P
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16494 with Med17 domain of Kingdom Fungi
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