<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16490

Description Transcription mediator subunit Med12
SequenceMTTRPSVGRPPPQRSLSSTGVVQRPPPLRTHSQQFSSSSPTRRGSDAFVDWTSEGEARHGPRIGASRLRLEISTDSKQTDAVESPKLSSAATPTWRPLVPPRGRPQLHFDVPCISHSHPAPGQHGGAIKPMPLPARPAQHAPPMSQKPKPSPTSTAKKDARPKPYTLEVPAAAPRYPPNGHADFYPWTGNHPEDQFSELAIRSGYYDKGSMTQNEIGSGRAAIFPALKHKSGLQTLSSIFTNVLAQRRAHGQITSASTFKPPPRVTVTDTKRELWLKDLANTTIPLRRLSRSIPHGIRGKVLLDQSLSKNIPIERAVWLAKCVGANELRAFRRKGGSGTFAMGGEAKWIRDFTVCVEQFVDTHFHAEQLLDREHFMDWLVASLENSPQTRLPMWLLITQVYWDDLSKYRRFGRRLAAALMIQLAETLNNPDRDLLAPLSDRLKFLLKGLICSNTHNFLTPKMWKTYRGIFMSNEGLGEPSLSAVLAAIDRRNNRFIATGAMKEQGPRRRLINLLDACLFEPFSNELPRLCWEIDSDKDLLLLTVLQWATSSHRPGSTKIYATVRILRSWSRLGTDVTGLILDFLDTTSRDSVCSKPALYHVVSELARSEHFSTPRYIKWLIARGGISTEADLAPDGPASTRLLAELPTHNVSDSIIELRTALLCRVGLSTKDEDGLVQDCMAHMNNSLPGMQASADFKLEGKGNFGSTGTSELPSGLSRTIRSELGLWLRQKVRLQMVQPTIPPLDEWDRSPMKGGTSALTALDFSTIRRYLEHLGDYSMLADVLKLVTSSSDAEVLASCADTLDAYIEVFAAIGALNDLFEILAGRLRTLTEETGLVPRTFLVSLSDLASRLPKHKVASQQLTQELARNDRKTAADAWSPVSDHMAIVETAEADFTDEIEKVLASGNSMDRATLERLFSRITLRLRASWEKPPEQQRSCALLLTRLRTFDAKQFDLLMVAWVGQFLQMQSRLSMMQVLGPLISFGCLAFRDVALGCRCSETEASPGSSYAPGTALELLCLLMAPCNLPGIMTPEEAYRLRIKQVHMQKYNHVDVLPVIRQAFAESFSNTYADSPRAFEARALLASREMYEFYQRVVLLDPVVFAQKLAFPLLQSSNRETVAAIDTSIDNLLLAGNMVEPITTELLLNRADDLSLPFCQVKLASILQTRDAVTDGDEASQSEHLAAFDSAIESAVNAGKTSWASIIPLLDISIGQHLRRRAATQFLGMFPSPKTSSMEASVMNIRVKRAENLLLIIDATAHSISDDAADPSNITLASDLVSTLNGTWLLLANTPSQEIRDTITSTWLPLLLSFVTTHVLVFEATKQGHENRAKATLTLVAIYLQLKALDISTPAIHSLLEQSFDLALHLVDALPEDIRLQCVRSLRDTTSNPEIAYLFSVASNSTESLFLSQKEKGPVIPGTSAAEARLAEKERLTPFVLRRWEILGEPTPNVGENDTSLSLTLFGARRG
Length1470
PositionKinase
OrganismDiplocarpon rosae
KingdomFungi
Lineage
Aromaticity0.07
Grand average of hydropathy-0.197
Instability index45.46
Isoelectric point8.27
Molecular weight162584.14
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16490
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     168.36|      40|     112|      23|      62|       1
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   23-   59 (64.78/36.06)	...................................QRP..PPLRTHSQ.QF.......SSSSPTRRG.SDAF.VDWTSEGEARH
   60-  140 (45.52/22.86)	GPRigasrlrleistdskqtdavespklssaatptWRPlvPP.RGRPQlHFdvpcishSHPAPGQHG.GAIK.PMPLPARPAQH
  142-  172 (36.07/16.39)	........................................PPM...SQ.K........PKPSPTSTAkKDARpKPYTLEVPA.A
  173-  188 (21.99/ 6.74)	APR....................................yPP.......................NG.HADF.YPWT.......
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.34|      22|     112|     712|     743|       2
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  302-  323 (37.52/12.97)	LLDQSLSKNIPIERAVWLAKCV
  712-  733 (37.83/31.21)	ELPSGLSRTIRSELGLWLRQKV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.74|      26|     584|     760|     785|       6
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  760-  785 (46.62/30.35)	LTALDFST..IRRYLEHLGDYSM.LADVL
 1345- 1373 (34.13/20.16)	LKALDISTpaIHSLLEQSFDLALhLVDAL
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     204.54|      79|     500|     626|     708|       7
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  626-  670 (57.46/29.76)	.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ISTEAD...LAPD..GPASTRLLAELP...THNVSDSIIELRTALLCRVGLST
  671-  708 (31.39/23.06)	KDEDGLVQDCMAHMNNSLpgmqASADFKLEGKGNFGST....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 1124- 1164 (30.55/11.63)	......................................gtselpsglsrtirselglwlrqkvrlqmvqptippldewdrspmkggtsaltaldfstirrylehlgdysmladvlklvtsssdaevlascadtldayievfaaigalndlfeilagrlrtlteetglvprtflvslsdlasrlpkhkvasqqltqelarndrktaadawspvsdhmaivetaeadftdeiekvlasgnsmdratlerlfsritlrlraswekppeqqrscallltrlrtfdakqfdllmvawvgqflqmqsrlsmmqvlgplisfgclafrdvalgcrcseteaspgssyapgtalellcllmapcnlpgimtpeeayrlrikqvhmqkynhvdvlpvirqafaesfsntyadsprafearallasremyefyqrvvlldpvvfaqklafpllqssnretvaaIDTSIDnllLAGNmvEPITTELLL........NRADDL....SLPFCQVKLAS
 1167- 1245 (85.15/49.51)	QTRDAVTDGDEASQSEHL....AAFDSAIESAVNAGKT.....................................................................................................................................................................................................................................................................................................................................................................................................................swasiiplldISIGQH...LRR....RAATQFLGMFPspkTSSMEASVMNIR...........
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.24|      17|     240|       3|      19|      11
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    3-   19 (31.63/18.94)	TRPSVGRPPPQRSLSST
  254-  270 (30.61/18.04)	TSASTFKPPPRVTVTDT
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.61|      15|     667|     745|     759|      13
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  745-  759 (28.97/17.71)	LDEWDRSPMKGGTSA
 1410- 1424 (26.63/15.65)	LSQKEKGPVIPGTSA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.10|      21|     885|     378|     400|      19
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  378-  400 (36.85/26.09)	WLVasLENSP.........QTRLPMWL..LITQV
 1287- 1318 (28.25/13.57)	WLL..LANTPsqeirdtitSTWLPLLLsfVTTHV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16490 with Med12 domain of Kingdom Fungi
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