<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16484

Description Mediator of RNA polymerase II transcription subunit 5
SequenceMDGNVGAVSQAITEVIARLCSNKETMSLKSLCSRLVQNPSALDVMLLFDKPTAFLQPICDLLDNWRYDEDQGEYQPVYEEFGSILLLVLSFTYRYNLSTIDLGIRSPESFVAKLLTRGHFSRKMEDMSDSEKQHLTGWIQGLFDNESGGLGDELMSSCPPQDFYLLVPTLFHETVLACSTRNLSDETLKGGLEYLVDTFLLPSLVPGITWLACHLWESRGDANAVLQILSALITNPASISNNTEASQMLNSILNIVAKNLEQSLRWLQRAEPSRQDVEPLLKALRGNLGWERRGASDHTELESWSGSTGGGLIVSLKSTIQAMDALGDLNSAIEAAGIDALAAEGLGGDAADLLGDPHSDLMQGLMGGGADDLLGFGSTGDLGDGLGF
Length388
PositionTail
OrganismDiplocarpon rosae
KingdomFungi
Lineage
Aromaticity0.07
Grand average of hydropathy-0.047
Instability index49.43
Isoelectric point4.39
Molecular weight41977.92
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16484
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.51|      22|      26|     244|     269|       1
---------------------------------------------------------------------------
  244-  269 (32.79/27.57)	EAS.QMLNSILnivaKNLEQSLRWLQR
  271-  293 (35.72/20.63)	EPSrQDVEPLL....KALRGNLGWERR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.40|      18|      26|     322|     347|       2
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  332-  355 (19.64/17.50)	AIEAAGIDALaaegLG....gdAADLLG
  364-  387 (26.76/ 6.29)	GLMGGGADDL....LGfgstgdLGDGLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.68|      17|      26|      19|      35|       3
---------------------------------------------------------------------------
   19-   35 (29.93/27.40)	LCSNKETMSLKSLCSRL
   46-   62 (30.75/28.39)	LLFDKPTAFLQPICDLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.01|      21|      26|     125|     145|       4
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  125-  145 (38.57/22.01)	EDMSDSEKQHLTGWIQGLFDN
  153-  173 (39.44/22.65)	ELMSSCPPQDFYLLVPTLFHE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16484 with Med5 domain of Kingdom Fungi
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