<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16447

Description Uncharacterized protein
SequenceMALLILSTPNMFDVAFRKWVVQKTMEFGSFDKVSELVTSPIQNFLEDRLDVMSDKLRELEENFEILHDYSMTPQRRPKILMQTCGHVAGAAFYYQPRHFREENVDWPPPGKMGPNLSPSSSPNVKLKITGLPNRGGVDQVQDVRDVGEMSSDSSNSSDSSDDERDSKKTASSSKS
Length175
PositionMiddle
OrganismCaenorhabditis japonica
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.07
Grand average of hydropathy-0.659
Instability index52.67
Isoelectric point5.24
Molecular weight19690.87
Publications









Function






Annotated function


GO - Cellular Component
cytoplasm	GO:0005737	IEA:UniProtKB-KW

GO - Biological Function
oxidoreductase activity	GO:0016491	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16447
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.94|      16|      17|     138|     153|       1
---------------------------------------------------------------------------
  138-  153 (27.65/18.96)	DQVQDVRDVGEMSSDS
  158-  173 (26.29/17.69)	DSSDDERDSKKTASSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.46|      11|      17|     103|     115|       2
---------------------------------------------------------------------------
  103-  115 (19.90/17.19)	NVDWPPPGKmgPN
  123-  133 (19.55/ 9.70)	NVKLKITGL..PN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.20|      13|      21|      31|      47|       3
---------------------------------------------------------------------------
   31-   47 (17.71/24.09)	DKVSELVtspiQNF..LED
   54-   68 (19.49/12.86)	DKLRELE....ENFeiLHD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16447 with Med4 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NVDWPPPGKMGPNLSPSSSPNVKLKITGLPNRGGVDQVQDVRDVGEMSSDSSNSSDSSDDERDSKKTASSSKS
103
175










Molecular Recognition Features






MoRF SequenceStartStop




1) DDERDSKKTASSSKS
2) KITGLPNRG
161
127
175
135