<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16445

Description Uncharacterized protein
SequenceMTSFVCGPQMNVPEGDSLTIAILLSDTILDLHYDSVFDSCPICSCSVSIRSRELGMYITPHEVLRQRTVGHSNMREHTMGTWSGFHVNSTTNCTCGFSAIRHRYLSCSTGLFPEDANEATTLDNAVANVIPPLDYKRRNAARDMIWFDSKSVHDLALLDQIRQMAFSLTLGKAISQMATVKEHKVNLATAMDIEMDINVPSEYIISHVDSLELLMLGNSAIEMSMKMSSINRNQTVSAQKFLTYFHPWGLQTANEIEELETTEWFDLLSMITPTLDGAMKQARKVSVADAQLSIEGPLTWKQLVMKSIRGRPTTDDDEDFSLAEPIPAVMRATDKEAIRTAPHIDQYYDQASLGPIDQPKDVMYLTIIPDDDVIYEKTVKFMEELTEKYEKMHLGRHIPFPVSTGTATRFRKILDKYHEEHKEEASFPEYEQHAATFASAQVRRQERELASQPPPIDERPERWSAHLTWKLNHEDGIVKGPEADFDMEYEGDHDKWEKPMDFRSNYMWRHKNAPRPNPPHFYEREGVLRVGNPNGSARIIAKHTVALTNEFNNMTKHLSDSKGFVSRLKLYVQQMEDLATYALTETPDAFERTGYRYQMAVEGRLKRAEGRRKKTEERLRYGAAKVMDEWNNEHGAKKPEESDLMFGATVGNIGPKDYVDDEAEEKKRRKQKEEEQYPPEGPQAPSPVPAGMVHIPETRKFWIKGGFNLLQYCVLDGTLEHTI
Length723
PositionMiddle
OrganismCaenorhabditis japonica
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.08
Grand average of hydropathy-0.597
Instability index47.84
Isoelectric point5.55
Molecular weight82537.42
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16445
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.54|      23|      52|      38|      62|       1
---------------------------------------------------------------------------
   38-   62 (42.16/42.81)	DSCPICSCSVS.IRSREL....GMYitPHE
   88-  115 (36.38/28.66)	NSTTNCTCGFSaIRHRYLscstGLF..PED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     234.50|      55|      56|     265|     319|       2
---------------------------------------------------------------------------
  211-  253 (37.00/18.45)	...............LELLMLGN....SAIEMSMKMSsinRNQTVS.AQkfLTYFHP..WGLQTA
  254-  305 (85.25/51.70)	NEIE.ELETT...EWFDLLSMIT....PTLDGAMKQA...RKVSVADAQ..LSIEGPLTWKQLVM
  306-  363 (79.89/48.01)	KSIR.GRPTTDDDEDFSLAEPIPavmrATDKEAIRTA...PHIDQYYDQ..ASL.GPIDQPKDVM
  377-  413 (32.36/15.25)	KTVKfMEELTEKYEKMHLGRHIP...fPVSTGTATRF...RKI......................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.72|      19|      24|     452|     470|       4
---------------------------------------------------------------------------
  452-  470 (38.56/22.17)	QPPPIDERPERWSAHLTWK
  479-  497 (35.16/19.59)	KGPEADFDMEYEGDHDKWE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16445 with Med13 domain of Kingdom Metazoa
Unable to open file!