<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16434

Description Uncharacterized protein
SequenceMIPRMGPPTARMENPLHVSFRNPQWPPNFINKENVLDYFCNQANAFYEMNSCNQQIRMQNITNRSVEDCLRTMQGIQYVVWYAQPPLFIICKQRRNSVQNVSPISYYYVINGSVHQAPDTFSLIQSRLLGALEPMRNAFQEVTNYARYNTAKGYYWEFKGKPATKKKDDSDEEEEKLEERSTNFQKTRTLMLLNQLFVEMPAYTALEKEEVDEEEDNKSTTLTTPAVVAPSGAASTPAAPAQKAAEPKFAQPAGRPVAKQ
Length260
PositionHead
OrganismCaenorhabditis japonica
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.10
Grand average of hydropathy-0.668
Instability index49.82
Isoelectric point6.76
Molecular weight29705.25
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16434
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.01|      33|      38|     143|     175|       1
---------------------------------------------------------------------------
  143-  175 (59.65/38.71)	TNYARYNTAKGYYWEFKGKPA..TKKKDDSDEEEE
  182-  216 (50.36/31.68)	TNFQKTRTLMLLNQLFVEMPAytALEKEEVDEEED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.78|      24|      36|      52|      85|       2
---------------------------------------------------------------------------
   52-   77 (40.41/41.48)	CNQqiRMQNITN...........RSVEDCLRTMQGIQ
   91-  125 (35.37/14.30)	CKQ..RRNSVQNvspisyyyvinGSVHQAPDTFSLIQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16434 with Med6 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TALEKEEVDEEEDNKSTTLTTPAVVAPSGAASTPAAPAQKAAEPKFAQPAGRPVAKQ
204
260










Molecular Recognition Features






MoRF SequenceStartStop




1) ISYYYVI
2) STPAAPAQKAAEPKFAQPAGRPVAKQ
3) YYWEFK
104
235
154
110
260
159