<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16426

Description Uncharacterized protein
SequenceMLAVIFKVTIDSIDANTDLTSEFFEKLYRVIEKKTPKEMVIMGNYMVDYIIAYSKLHDGNDQLFRNIARAISRVTFEFQVMRADRFLLSLVAHPATDEDALMCIQIANEFILTPEFQDRIKWFHTQNVLPKNVAPTEYIRAIIRYHDTFPEFEACQLVTKNEVKMNPHLPSYYGCLIDRLLPILDQFMYAALEQQGYKLNPQVLQVVAMFYRYHAMPIHFMYSVLFTSHGLMSGPDAKDFVLGFAAHVDEVHLTDSFVKYNHQKSSKEQLIMELIDRMSASLDFVLVPPPFVAKDWKMAELTPGAQTLYLSCIELMASPHSPEDLVSAMINVMQMKPHLRPYNVVNLIALLLTALPSAFANALQAEVIAVLDNKETENLKFEDIVFDNYEEFQLVNVTNRTRSLNVISQAYWTHCNLCLMDYFHHEYVSEVLEHVTTENDLWYTLRLVMPILRRYWENWDTAKLMRSQGEDYGPQLILKKVFRKMGAMAEQNVEFTHEKHLCDLFYNCKYVFAGDFLRETAIAEFAKLPERMRDRLKFYVSSTSEPPRAAASPVKEEKTPEKDNSRMAEHPGQSTEQQRPTQYEIEDVGGGVQQPRPPPPPKLIHEEQQPPENQPQHAMHMYPGMSLHHPMQQMHPMQMQQQYGMHHPMQQQHHMQQQQQQQQQMHMNPMMHGMTPQQQQQQYAYMQQMQQMQQMQQQQQQHGQYMQHHMQ
Length711
PositionTail
OrganismCaenorhabditis japonica
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.10
Grand average of hydropathy-0.448
Instability index52.85
Isoelectric point5.91
Molecular weight83236.70
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16426
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     154.22|      16|      17|     627|     642|       1
---------------------------------------------------------------------------
  603-  616 (23.82/ 6.50)	LI.....HEEQQ..PPENQPQ
  627-  642 (39.39/14.99)	LH.....HPMQQMHPMQMQQQ
  645-  660 (39.26/14.92)	MH.....HPMQQQHHMQQQQQ
  665-  679 (26.37/ 7.89)	MH....mNPM..MHGMTPQQQ
  680-  700 (25.38/ 7.35)	QQqyaymQQMQQMQQMQQQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     112.92|      32|      32|     165|     196|       2
---------------------------------------------------------------------------
  165-  188 (38.10/20.78)	...........MNPHLPSY...YGCLIDRL..LPILDQFM
  189-  221 (40.61/22.63)	YAAL.EQQGykLNPQVLQV...VA.MFYRYhaMPI..HFM
  222-  258 (34.21/17.92)	YSVLfTSHGlmSGPDAKDFvlgFAAHVDE...VHLTDSFV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.24|      26|      37|      10|      46|       3
---------------------------------------------------------------------------
   10-   35 (42.63/44.63)	IDSIDANTDL...TSEFFEKLYRVIEKKT
   47-   75 (37.60/16.31)	VDYIIAYSKLhdgNDQLFRNIARAISRVT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.01|      30|      31|     518|     548|       8
---------------------------------------------------------------------------
  518-  548 (45.28/35.00)	RETAIAEfAKLPERMRDRLKFYVSSTSEPPR
  550-  579 (50.73/33.93)	AASPVKE.EKTPEKDNSRMAEHPGQSTEQQR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16426 with Med23 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LKFYVSSTSEPPRAAASPVKEEKTPEKDNSRMAEHPGQSTEQQRPTQYEIEDVGGGVQQPRPPPPPKLIHEEQQPPENQPQHAMHMYPGMSLHHPMQQMHPMQMQQQYGMHHPMQQQHHMQQQQQQQQQMHMNPMMHGMTPQQQQQQYAYMQQMQQMQQMQQQQQQHGQYMQHHMQ
536
711










Molecular Recognition Features






MoRF SequenceStartStop




NANANA