<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16424

Description Uncharacterized protein
SequenceMCAKKRCNNAQSIECVPPMPQNQVDFLAQRAPKRSYELMAPVVSQPQMIFDVKRVQYMQAPPQMQIQQMQQQMQQQQQQQQQHSQQQQHSQQQQHSQQQQQQQHSQQQQQQAPPTPPQQQPQQQQQRPNSNSSQSQGGPSPPRVSQHSSPQQAVLHPGVKTDCIENLEQHQHSHQHAHQQQQQQQQQQQQQQHQQQQQQQQQQRMMFQPQTYPEPVLFRAVLFRAVLLRAVLFRAVLFRAVLFHSGQFYSIPGSSTPGSSTPGSSIPGSSIPGSSIPGSSIPGSSIPFRAVLFHSGQFYSGQFYSGQFYSGQFYSRQFYSGQFYSGQFYSGQFYSIPGSSIPFRAVLFHSGQFYSGQFYSGQFYSGQFYSGQFYSGQFYSGQFYSGQFYSGQFYSGQFYSGQFYSGQFYSGQFYSRHIAAR
Length421
PositionTail
OrganismCaenorhabditis japonica
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.14
Grand average of hydropathy-0.920
Instability index84.34
Isoelectric point9.67
Molecular weight48266.54
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16424
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     248.36|      19|      19|     351|     369|       1
---------------------------------------------------------------------------
  291-  310 (39.50/12.44)	VLFHS..GQFYSGQFY.....sGQFYS
  311-  330 (43.83/14.50)	GQFYS..RQFYSGQFY.....sGQFYS
  331-  355 (27.32/ 6.62)	GQFYSipGS..SIPFRavlfhsGQFYS
  356-  375 (45.90/15.49)	GQFYS..GQFYSGQFY.....sGQFYS
  376-  395 (45.90/15.49)	GQFYS..GQFYSGQFY.....sGQFYS
  396-  415 (45.90/15.49)	GQFYS..GQFYSGQFY.....sGQFYS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      98.08|      18|      19|     250|     267|       2
---------------------------------------------------------------------------
  128-  142 (23.80/ 7.43)	..PNSNS.SQSQGGPSPP
  250-  267 (37.33/16.12)	SIPGSSTPGSSTPGSSIP
  270-  287 (36.95/15.88)	SIPGSSIPGSSIPGSSIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     230.78|      44|      86|      79|     122|       3
---------------------------------------------------------------------------
   30-   74 (60.85/10.39)	RAPKRSYEL...MAPVVSQPQMIFDVKRVQYMQAPPQmqiqQMQQQMQ
   79-  122 (92.39/19.96)	QQQQHSQQQQHSQQQQHSQQQQQQQHSQQQQQQAPPT....PPQQQPQ
  168-  214 (77.54/15.46)	EQHQHSHQHAHQQQQQQQQQQQQQQHQQQQQQQQQQR.mmfQPQTYPE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16424 with Med15 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NAQSIECVPPMPQNQVDFLAQRAPKRSYELMAPVVSQ
2) QMIFDVKRVQYMQAPPQMQIQQMQQQMQQQQQQQQQHSQQQQHSQQQQHSQQQQQQQHSQQQQQQAPPTPPQQQPQQQQQRPNSNSSQSQGGPSPPRVSQHSSPQQAVLHPGVKTDCIENLEQHQHSHQHAHQQQQQQQQQQQQQQHQQQQQQQQQQRMMFQP
9
47
45
209










Molecular Recognition Features






MoRF SequenceStartStop




NANANA