<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16420

Description Uncharacterized protein
SequenceMSATTYFPGVPMNTDPVTTMATSSSDTMTTPSTASAYPTTAPSGSGALPGASPAKPSLEEATRAVSSLEKGEKDKAPGSVDPTATATTSTATSNAGGTSTTAKGGTTATTTTTTTSSGTTATGRMSPQVPLQTLFNEAIARCNNCLFLIRKLRSKQSDIIDLFLYTEVDQENFHVALQEYRDFGTIVKEVMNLYEKLEHYSRRLPKVVPPIDNINVMRTLYTQEHTMAHTNINYLIEKMIDSGNWNEGNYQGFYYLSELLRVHGHRKRQMTEDHRRKVLPACELKATATTGHIAFEAAYMAMKKDIVNQSLGIYPRIMHQTATSLVIEFLFGCGGTKTSTDQDVVFTMKFLLVERNGHVEYINMMAPHEEWLLYNNFGPLSVNPFSPSRFDVYRRLTKQANIHLYTCFGSHASRWTANTLIQFVSLFGKFRQVFQTKCRACKQITKNFLPPLIFDIRNPSIAYHEGCR
Length468
PositionTail
OrganismCaenorhabditis japonica
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.09
Grand average of hydropathy-0.335
Instability index49.25
Isoelectric point8.85
Molecular weight52100.65
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16420
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.68|      16|      19|      85|     100|       1
---------------------------------------------------------------------------
   35-   53 (22.18/ 9.37)	SAYPTTAPSGSGalpGASP
   85-  100 (28.10/13.75)	TATTSTATSNAG...GTST
  107-  122 (26.40/12.49)	TATTTTTTTSSG...TTAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     219.18|      66|      90|     212|     279|       2
---------------------------------------------------------------------------
  212-  279 (112.53/77.58)	DNINvmRTLYTQEHTMAHTNINYLIEKMIDSGNWNEGNYQGFYYLSELLRV..HGHRKR.QMTEDHRRKVL
  305-  373 (106.64/67.51)	DIVN..QSLGIYPRIMHQTATSLVIEFLFGCGGTKTSTDQDVVFTMKFLLVerNGHVEYiNMMAPHEEWLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.83|      19|      19|     172|     190|       3
---------------------------------------------------------------------------
  172-  190 (32.42/26.48)	NFHVALQEY.RDFGTIVKEV
  192-  211 (29.41/23.30)	NLYEKLEHYsRRLPKVVPPI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16420 with Med27 domain of Kingdom Metazoa
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