<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16415

Description Mediator of RNA polymerase II transcription subunit 4
SequenceMLPYKKDAPTSSGPVSRIGSSAKLNQLSVPGVNSRPSSRPNTPSTYVSSSLNPTKSLPVTSNSVESKIKNQEQAELFESLPIMRSIREFEHELRELSQSISTFREENLPSQVGKLIQMDKNLTTEKLNVRKSQELGAEIEKLRTENNQLSQVSTRFLKELIACRSELRQLPKLPADRQSSRDSRLKEIGVQELLDYSMKLAKFSKAPTTASGQLPHPNNFIWPAEDALRRGMLALASLKSEEIIKAELGEPEQKVVEDDEDVEMEDVEDMDAPKAPKEPGAPSTRGTATAGTATEPAKASHALDLDLFDGDDSEDYSE
Length318
PositionMiddle
OrganismCandida auris (Yeast)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Saccharomycotina> Saccharomycetes> Saccharomycetales> Metschnikowiaceae> Clavispora> Clavispora/Candida clade.
Aromaticity0.04
Grand average of hydropathy-0.721
Instability index58.18
Isoelectric point5.08
Molecular weight35135.94
Publications
PubMed=27988485

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364141
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP16415
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.35|      17|      31|     158|     174|       1
---------------------------------------------------------------------------
  158-  174 (28.93/16.12)	KELIACRSELRQLPKLP
  191-  207 (28.42/15.74)	QELLDYSMKLAKFSKAP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.91|      31|      42|       9|      39|       2
---------------------------------------------------------------------------
    9-   39 (53.54/30.56)	PTSSGPVSRIGSSAKL.NQLSVPGVNSRPSSR
   53-   84 (48.38/27.02)	PTKSLPVTSNSVESKIkNQEQAELFESLPIMR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16415 with Med4 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AELGEPEQKVVEDDEDVEMEDVEDMDAPKAPKEPGAPSTRGTATAGTATEPAKASHALDLDLFDGDDSEDYSE
2) MLPYKKDAPTSSGPVSRIGSSAKLNQLSVPGVNSRPSSRPNTPSTYVSSSLNPTKSLPVTSNSVE
246
1
318
65










Molecular Recognition Features






MoRF SequenceStartStop




1) DAPKA
2) MLPYKKDAPTSSGPVSRI
3) TRGTATAGTATEPAKASHALDLDLFDGDDSEDYSE
271
1
284
275
18
318