<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16387

Description Uncharacterized protein
SequenceMDNNNWRAAQGVQIPGQPMGGESVAAAGMEGGDWRSLLYPESRQRIVNKIMETLKRHLPFSGQEGLQELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNPMANSLPPNAANNSKNPQDPGSQSMPSQMQNQVQQLPMPMVSNQSQVRQQLLSQTNNASSGVPNSAGLTSALPTVGGMSQGTMPSVSGQNPSMQTIQNIPNVTPNAVGNSMGQGMPNNIYANSQRQVQGRQQQVVTQEQQQQSQNSQQYLYNHQLQQHLMKKFQPGGVPQSIMQSQIQQQQQQQQQQQQQQQQNLLQPNPLQSSQQAVMQNSLRQTPASSTLQNQQSSLQQSTQSMLQQQPQSVLRQQPQQQPQQPSIMHQQQTSMPQHQMLPTQQQQQQQQQQQLSGQQPNTTNMQQNQMIGQQNSILDAQQHQQQQRMIAQQNNISNMQQQQTISQPNNLPNMHQQQSTSQQNNLPNMHQQQLGPQANLPGFQQQQMVGIQHGNSSLQSNQQSVHVLQQSKVPVQQQMQPNMANMLPNQGHQSHSQPMQQQLMSHIQSQPGQLHQPVGLQHQANALQRDMQQRIQTSGPLIQPQTTIDQQKQLSQSQRGIPEAPMTSTDSSTQTGNANGGDWQEEIYQKIKSMNEMYFPELNEMYQRMAVKLQQHDALPQQTKNDQLEKLRFFKVMLERLILFLRTNKNEIQPAHKEKIVGVEKQIVNILSSHRPRKPISSLQQGQLAQPHMHPMQQSQQQQPQISQMHTSEGQMNSQMQPMSVQSSVPTTQQNNLTNLQPNSLSSVSSVSNSRQNIMDGIQPGTNVDSGQGNAMNQMQQVAMSSLQQNPVSGPQQMNVNSMSSQSGLTALQSNVNSLPSNSNVLQPQQIKQEQQMFSTQQLKQQYQQRQIQQQYMQRQLIQQQQQTTQQQSTQLPSQQMMQLNQMNDTNDMKMRHQMGGKAGVLQQHNANNQRLYHHQQMKPGTPFSLSSQQVLQASSPQIGHHPSPQIDQQILLSSHTKSGTPLQSANSPFIVQSPSTSMAPSPMPGESEKIASGVSSLLNPGNSVHQPTAAASMPNQSLAIGTPGISASPLLAEFSSPDGTHGVASTIAAGNSNVVEQPLERLLRAVKSMSPKALSASVSDISSVVSMVDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFFTQDGPSGTKKMRRYTSAMPSNVVSSTGSANDNFRHLNGNESDGESTGASSIKRPRIEANHALEEELREINQRLIDTVVYICEDDVDPTAAAAAAEGGEGTIVKCSFSAVALSPNLNSQYASAQMSPIQPLRLLVPSNYPNCSPILLDKFPVEVSKEYEDLSIKAKSRFSISLRALAQPMSLGDIARTWDKCARSVISEYAEQSGGGTFSSKYGTWENCLSAA
Length1387
PositionTail
OrganismHandroanthus impetiginosus
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Bignoniaceae> Crescentiina> Tabebuia alliance> Handroanthus.
Aromaticity0.03
Grand average of hydropathy-0.822
Instability index73.71
Isoelectric point9.18
Molecular weight153244.48
Publications
PubMed=29253216

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16387
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            10|     955.86|      96|      96|     260|     355|       1
---------------------------------------------------------------------------
   78-  151 (81.76/14.62)	...............EKIY..TAATSQSD..........Y.LRKISLKMLT....M...ETKSQNP...MANS..LPPN.....A..A..NNSKNP.......Q.DPGS.QSMP.SQ.........MQNQV..QQLP...MP....MVSNQ
  152-  255 (96.56/19.08)	SQ.....V..RQQLLSQTNnaSSGVPNSAgltsalptvgG.MSQGTMPSVS....G...QNPSMQT...IQNI....PN.....V.......TPNAV.GNSMGQ.GMPN.NIYA.NSQR..QVQGRQQQVVtqEQQQ...QS....QNSQQ
  260-  355 (167.84/40.58)	HQ.....L..QQHLMKKFQ..PGGVPQSI..........M.QSQIQQQQQQ....Q...QQQQQQQ...QQNL..LQPN.....P..L..QSSQQAVMQNSLRQ.TPAS.STLQ.NQQS..SLQQSTQSML..QQQP...QS....VLRQQ
  358-  431 (90.57/17.27)	QQ.....P..QQ.........P.....SI..........MhQQQTSMPQHQmlptQ...QQQQQQQ...QQQLsgQQPN.....TtnM..QQNQMIGQQNSI..........LD.AQQ...............HQQQ...QR....MIAQQ
  437-  528 (105.53/21.78)	MQ........QQQTIS..Q..PNNLP.NM..........H.QQQSTSQQNN....L...PNMHQQQlgpQANL....PG........F..QQQQMVGIQ...H....GN.SSLQsNQQSvhVLQQS.KVPV..QQQM...QPnmanMLPNQ
  530-  633 (93.68/18.21)	HQshsqpM..QQQLMSHIQsqPGQLHQPV.........gL.QHQ.ANALQR....D...MQQRIQT...SGPL..IQPQ.....T..TidQQKQLSQSQRGIPE.APMT.ST.....DS..STQTGNANGG..DWQEeiyQK....IKSMN
  724-  794 (75.56/12.74)	GQ.....L..AQPHMHPMQ......................QSQQQQPQIS....Q...MHTSEGQ...MNSQ..MQPM.....S..V..QSSVPTTQQNNLTNlQPNSlSSV.....S..SVSNSRQ.......................
  795-  871 (91.65/17.60)	............NIMDGIQ..PG...................TNVDSGQGN....A...MNQMQQV...AMSS..LQQN.....P..V..SGPQQMNV.NSMSS.QSGL.TALQ.SNVN..SL.PSNSNVL....QP...QQ....I..KQ
  873-  964 (96.83/19.16)	QQ.....MfsTQQLKQQYQ..QRQIQQQY..........M.QRQLIQQQQQ....T...TQQQSTQ.lpSQQM..MQLN.....Q..M..NDTNDMKMRHQM...GGKA.GVLQ..QHN..ANNQRLYHHQ..QMKP...GT.........
  965- 1049 (55.89/ 6.81)	.........................PFSL..........S.SQQVLQASSP....QighHPSPQID...QQIL..LSSHtksgtP..L..QSANSPFIVQSPST.SMAP.SPMP.GESE..KIASGVSSLL....NP...GN....SVHQ.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16387 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




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
2) LSSHRPRKPISSLQQGQLAQPHMHPMQQSQQQQPQISQMHTSEGQMNSQMQPMSVQSSVPTTQQNNLTNLQPNSLSSVSSVSNSRQNIMDGIQPGTNVDSGQGNAMNQMQQVAMSSLQQNPVSGPQQMNVNSMSSQSGLTALQSNVNSLPSNSNVLQPQQIKQEQQMFSTQQLKQ
3) NFFTQDGPSGTKKMRRYTSAMPSNVVSSTGSANDNFRHLNGNESDGESTGASSIKRPRIE
4) QQYMQRQLIQQQQQTTQQQSTQLPSQQMMQLNQMNDTNDMKMRHQMGGKAGVLQQHNANNQRLYHHQQMKPGTPFSLSSQQVLQASSPQIGHHPSPQIDQQILLSSHTKSGTPLQSANSPFIVQSPSTSMAPSPMPGESEKIASGVSSLLNPGNSVHQPTAAASMPNQSLA
94
709
1163
892
624
883
1222
1062










Molecular Recognition Features






MoRF SequenceStartStop




NANANA