<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16381

Description Fibrillarin
SequenceMVARPPTRGRGGGGGFRGGRGDGGGRGGRGGGRGGFGGRGGGSAMKRGGGRGGGRGGRGGGMKGGSKVVVEPHRHEGVFIAKGKEDALCTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSKLAAAILGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASFFLKAGGHFVISIKANCIDSTVPAEAVFAQEVKKLQADQFKPIEQVTLEPFERDHACVVGGYRMPKKQKPAA
Length306
PositionUnknown
OrganismHandroanthus impetiginosus
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Bignoniaceae> Crescentiina> Tabebuia alliance> Handroanthus.
Aromaticity0.07
Grand average of hydropathy-0.321
Instability index35.33
Isoelectric point10.09
Molecular weight32256.55
Publications
PubMed=29253216

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
methyltransferase activity	GO:0008168	IEA:UniProtKB-KW
RNA binding	GO:0003723	IEA:UniProtKB-KW
RNA helicase activity	GO:0003724	IEA:UniProtKB-EC

GO - Biological Process
methylation	GO:0032259	IEA:UniProtKB-KW
rRNA processing	GO:0006364	IEA:UniProtKB-KW









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16381
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.20|      17|      17|      29|      45|       1
---------------------------------------------------------------------------
   10-   26 (30.78/ 7.32)	RGGG..GGFrGGRGDGGGR
   29-   45 (38.97/10.78)	RGGGR.GGF.GGRGGGSAM
   47-   62 (30.45/ 7.18)	RGGGRgGGR.GGRGGG..M
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     182.50|      55|     159|      77|     134|       2
---------------------------------------------------------------------------
   77-  134 (86.36/88.82)	GVFIAKGKedALCTKNLVPGEAVYNEKRISVQNEDGTKVEYRVWNPFRSKlAAAILGG
  241-  295 (96.14/84.41)	GHFVISIK..ANCIDSTVPAEAVFAQEVKKLQADQFKPIEQVTLEPFERD.HACVVGG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16381 with Med36 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MVARPPTRGRGGGGGFRGGRGDGGGRGGRGGGRGGFGGRGGGSAMKRGGGRGGGRGGRGGGMKGGSKVV
1
69










Molecular Recognition Features






MoRF SequenceStartStop




1) MVARPPTRGRGGGGGFRGGRGDGGGRGGRGGGRGGFGGRGGGSAMKRGGGRGG
1
53