<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16380

Description Uncharacterized protein
SequenceMANTSVSLDKWREYFRGANSDIFDIIEHAIMVAASDCPYDFKLKRDRIAEMLFACKATRCYGCDRIQLAVPNGDGLDKSEDKYKSEIEAGGSKDTKESKVNSSSRDDDDHREVMEMNVNQVTNYSYGDAEALTDEIEEEYLYYEEVQRIKEVLDNSEEESELMLFDYLRKLQLMPLSVETLKATEIGKSVNALRKRGSKEIRNLARTLIEDWKVMVDSWVSTTAEIAGAEMASESVKTSAVEEEEGLPSPPLDEGAFFATPTSMELSQFFDGMDDDGNPRNVGEFNKNRESGRKPSFEKKDTRNWKVESPDDSRAPPKGKKIEQRRNLEPTLKKQAPPPKPNRPSGGESGPGRPKPLSSESGPGRPKPAIKPKANNEGRIEQKSDKSTIQKKQMPPQVEKSRGNNDGSVRMNLEAAKRKLQERYQEAENAKKQRTIQVVELHDLPKQSLARNQHMRPGNHNRNWANGRR
Length469
PositionUnknown
OrganismHandroanthus impetiginosus
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Bignoniaceae> Crescentiina> Tabebuia alliance> Handroanthus.
Aromaticity0.06
Grand average of hydropathy-1.059
Instability index50.91
Isoelectric point6.01
Molecular weight53089.71
Publications
PubMed=29253216

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16380
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     135.24|      26|      26|     330|     355|       1
---------------------------------------------------------------------------
  306-  329 (23.25/ 7.74)	...KVESPD.DSRA.PPKGKKIEQRRNlE
  330-  355 (46.77/22.63)	PTLKKQAPP.PKPN.RPSGGESGPGRP.K
  356-  383 (33.15/14.01)	PLSSESGPGrPKPAiKPKANNEGRIEQ.K
  387-  410 (32.07/13.32)	STIQKKQMP.PQVE.KSRGNNDGSVR...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.64|      13|      15|      73|      85|       2
---------------------------------------------------------------------------
   73-   85 (22.79/12.86)	GDGLDKSEDKYKS
   90-  102 (21.85/12.06)	GGSKDTKESKVNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.39|      12|      24|     130|     141|       3
---------------------------------------------------------------------------
  130-  141 (19.44/11.34)	EALTDEIEEEYL
  151-  162 (18.95/10.89)	EVLDNSEEESEL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16380 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EMASESVKTSAVEEEEGLPSPPLDEGAFFATP
2) SEDKYKSEIEAGGSKDTKESKVNSSSRDDDDHREVM
3) SMELSQFFDGMDDDGNPRNVGEFNKNRESGRKPSFEKKDTRNWKVESPDDSRAPPKGKKIEQRRNLEPTLKKQAPPPKPNRPSGGESGPGRPKPLSSESGPGRPKPAIKPKANNEGRIEQKSDKSTIQKKQMPPQVEKSRGNNDGSVRMNLEAAKRKLQERYQEAENAKKQRTIQVVELHDLPKQSLARNQHMRPGNHNRNWANGRR
230
79
263
261
114
469










Molecular Recognition Features






MoRF SequenceStartStop




1) EQRRNLEPTLK
323
333