<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16379

Description Uncharacterized protein
SequenceMRQWATDAATVNRCEKTFASAEKILKILNSSKPDLLQWRKDKAVQMMYNVVMSLREIRESNSVHLKKTQQVGASISHLEAPQTQQRENSLQFNNISASLHQSLRQGVALNPSSIVNSHQFSLMKSTPQHQWTPQGSVVSSPHKVSQICSDQRGLRMLLNPMDGSGQYDSLGTSQTTVTLPANIFNSSDYAVSPIAQPSVSVSPNKRQKMKQPVQQRTENNKQQMLQKRGEDMKLRRLVGFNQKGSPLPPPSSSSPYAASPQNSQQSSQQHEMKDLTSKLSKSATPSLSFSSSALPSPLTPLTPSSMPVDYTKSPSAAPAQLPSQETSQHQFVNEPCLHKESTYPPGDKQSPSDNGDAVKRLVEVVKSMSSKALNAALQDIDAVTNLTDREAVHRLPKKFVFQDLADDISRDDNGYFSNNNSMMSRMKRQHDAVTLNDSIRETEYHARDRIKRMEKEPNDHLLQEIEEINQKLIETVVDVSGRESDAGTLIRCSYIPVGISREIKKSSTSEQMFPNLLLDLVVASDYPNSSPTVLETMPRGCSDGEEGRCLWMKAKIKFTLSLRKYSQPIKLKEMAETWNACAREVFREFAEQMGGGDFSSKYGKWENCVVAA
Length612
PositionTail
OrganismHandroanthus impetiginosus
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Bignoniaceae> Crescentiina> Tabebuia alliance> Handroanthus.
Aromaticity0.05
Grand average of hydropathy-0.679
Instability index61.46
Isoelectric point8.94
Molecular weight68268.26
Publications
PubMed=29253216

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16379
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     174.51|      50|      51|     210|     260|       1
---------------------------------------------------------------------------
  210-  259 (88.95/47.71)	KQPVQQRTENNKQQMLQKRGEDMKLRRLVGFN..QKG..SPLPP..PSS......SSPYAAS
  264-  318 (56.25/23.81)	QQSSQQHEMKDLTSKLSKSATPS.....LSFS..SSAlpSPLTPltPSSmpvdytKSPSAAP
  320-  351 (29.31/10.13)	................QLPSQETSQHQFVNEPclHKE..STYPP..GDK......QSP....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     224.66|      59|      64|      82|     143|       2
---------------------------------------------------------------------------
   28-   77 (57.72/38.50)	L..NSSKPDLLQWRKDKAvqmmyN.VVMSL..RE........IRESNSVHL.KKTQQ.....VGASIS..H.
   82-  143 (92.64/81.02)	Q..TQQRENSLQFNNISA.....S.LHQSL..RQGVALNPSSIVNSHQFSLmKSTPQHQwtPQGSVVSSPHK
  146-  205 (74.30/52.08)	QicSDQRGLRMLLNPMDG.....SgQYDSLgtSQTTVTLPANIFNSSDYAV...SPIAQ..P..SVSVSPNK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.42|      25|      56|     475|     499|       3
---------------------------------------------------------------------------
  475-  499 (42.64/31.55)	TVVDVSGRESDAGTLIRCSYIPVGI
  532-  556 (46.78/35.36)	TVLETMPRGCSDGEEGRCLWMKAKI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16379 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DDNGYFSNNNSMMSRMKRQHDAVTLNDSIR
2) IAQPSVSVSPNKRQKMKQPVQQRTENNKQQMLQKRGEDMKLRRLVGFNQKGSPLPPPSSSSPYAASPQNSQQSSQQHEMKDLTSKLSKSATPSLSFSSSALPSPLTPLTPSSMPVDYTKSPSAAPAQLPSQETSQHQFVNEPCLHKESTYPPGDKQSPSDNGDAVKRLVEV
3) SDQRGLRMLLNPMDGSGQYDSLGTSQTTVTL
411
194
149
440
364
179










Molecular Recognition Features






MoRF SequenceStartStop




NANANA