<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16372

Description Uncharacterized protein
SequenceMQRAPTPGLPTQPHPEMEQMNSTHQQQHRTSSSSSSRAHNFHPARRAILDLFNLYLGRSAPQKSDESIREPPNKTQKRVTAINRELPPPNEQFLFDFGHILSQFPDQEQLRAVTESVLITLVIQCCSHAPRAEFLLFALRSLCNIGYINWDTFLPSLLSSVSSAESPVGQGNQTVAAVASATSSQSGVLPPSNAVPPSTNFQSSNPASPLPSIHGIGSPAQSGAEPSSCATLSPMKSNDVICNGQQSARVNLSVRENAISSLRQLSCKIIVIGLDSNLKPVTRADIFNHMLNWLTNWDQKQQGADEIDSVKFWKPDKALIEWLHNCLDVIWLLVDDNKCRVPFYELIRSGLQFIDNIPDDEALFTLILEIHKRRDMMAKHMLMLDQHLHCPSFGTPRLLPQATTNISGETVTNMRYSPITYPSVLGEPLHGEELATSIPRGSVDWERALRCLRHAFRNTPSPDWWRRVLLLAPCHRLHAQGPTPGAVFTSEMISEATIDRIVELLKLTNSETNCWQEWLIFSDVFFFLMKHGCIDFVDFVDKLVTRLQDGDQHILRTNHVTWLLAQIIRVELVMTALNTDSRKVETTRKILSFHKEDRSSDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGERIMDYMNMDERSIGMFWVVSYTMAQPACETVMNWLTSAGVTETLPGSSIQSNERLMMMQEVSPLPISLLSGFSINLCLKLAYQMEESMFNGQVVPSIAMVETYVRVLLIAPHALFRSLMTVLTQKNQNPLSKPAAYILVFEILNYRLLSLYRYQGKNKGLIHDVTKMIATLKGKRGDHRAFRLAENLCMNLILSMREFFYVKRDGKGPTEFTETLNRITVTNLAIIIKTRGIAEVEHLLYLQTMLEQILATSQHTWSEKTLRYFPSILRDALAGRIDKRGLAVQAWQQAETTVINQCTQLLSASADPTYVMTYINHSFPQHRQYLCAGAWILMYGHPESINSLHLGRVLREFSPEEVTANIYTMVDVLLHHFNLELQRGRSLQDLMIKVTANLTFFIWTHELLPLDILLLALIDRDDDPYALRIVISILESKDLQQRVKAYTLNRGLPQHWLFTGTFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPQIVYRFIENDFIDAAD
Length1162
PositionTail
OrganismHandroanthus impetiginosus
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Bignoniaceae> Crescentiina> Tabebuia alliance> Handroanthus.
Aromaticity0.08
Grand average of hydropathy-0.184
Instability index46.27
Isoelectric point6.76
Molecular weight132338.59
Publications
PubMed=29253216

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16372
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.22|      25|     181|     325|     355|       1
---------------------------------------------------------------------------
  325-  355 (34.28/44.68)	NCLDViWLLVDDnkcrVPFYeLIRSG.LQFID
  513-  538 (47.95/33.71)	NCWQE.WLIFSD....VFFF.LMKHGcIDFVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     218.63|      83|     337|     714|     807|      11
---------------------------------------------------------------------------
  208-  255 (38.64/14.47)	SPLPsIHGIgspaqSGAEPSSCATLSpMKSNDVICNGQ...QSARVNLSVR.......................................................
  716-  807 (135.84/110.28)	SPLP.ISLL.....SGFSINLCLKLA.YQMEESMFNGQvvpSIAMVETYVRvlliapHALFR.SLMTVLTQKN.QNPLSKPAAYILVFEILNYRLLS.....LYRY
 1104- 1152 (44.15/20.36)	.........................................................HWLFTgTFKRVELQKAlGNHLSWKERYPTFFDDIAARLLPvipqiVYRF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16372 with Med23 domain of Kingdom Viridiplantae
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