<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16368

Description "Molecular chaperones HSP70/HSC70, HSP70 superfamily"
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRYGDPSVQNDMKLWPFKVIPGPGDKPMIVVNYKGEEKQFSAEEISSMVLTKMKEIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKASSAGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSNVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSQGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILNVSAEDNTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTIKDEKIASKLPAADKKKIEDAIESAIQWLDGNQLAEADEFEDKMKELESICNPIIAKMYQGGDGDGAGMAGGMDEDGPSAGGSGAGPKIEEVD
Length651
PositionUnknown
OrganismHandroanthus impetiginosus
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Bignoniaceae> Crescentiina> Tabebuia alliance> Handroanthus.
Aromaticity0.06
Grand average of hydropathy-0.468
Instability index33.90
Isoelectric point5.07
Molecular weight71281.75
Publications
PubMed=29253216

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16368
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     191.00|      62|     397|     102|     198|       1
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   27-   90 (101.96/60.61)	DRVEIIANDQGNR.....TTPSYVAFTD....TERLIGDAAKNQVAMNPtnTVF.DAKRLIGRRYGDPSVQNDM
  103-  174 (89.04/92.48)	DKPMIVVNYKGEEkqfsaEEISSMVLTKmkeiAEAYLGSTIKNAVVTVP..AYFnDSQRQATKDAGVISGLNVM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.46|      25|      41|     511|     535|       2
---------------------------------------------------------------------------
  496-  532 (32.54/19.43)	AED......nttgqknkititNDKGRLSKEEIEKMVQEAEKYK
  533-  575 (29.92/17.30)	AEDeehkkkveaknalenyayNMRNTIKDEKIASKLPAADKKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.79|      23|     189|     177|     216|       3
---------------------------------------------------------------------------
  185-  212 (34.97/45.98)	IAYGLDKKASSAGEKNvlifdLGGGTFD
  218-  240 (41.82/14.77)	IEEGIFEVKSTAGDTH.....LGGEDFD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.24|      18|      41|     337|     356|       4
---------------------------------------------------------------------------
  337-  356 (25.55/22.68)	VHDVVLVGGSTRipKVQQLL
  381-  398 (29.70/18.48)	VQAAILSGEGNE..KVQDLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16368 with Med37 domain of Kingdom Viridiplantae
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