<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16362

Description Uncharacterized protein
SequenceMVSKQLIVAVEGTAAIGPFWQTIVSDYLEKIIRCFCGNEPTGQKPSNIHVELALVMFNAHGSYSACLVQRSGWTRDMDIFFQWLSAIPFAGGGFNDAAIAEGLAEALMMFSSPNGNQSQNVEGQRHCILVAASNPYPLPTPVYRPQPQNAEKSDGIEALPDTRLFDAEAIAQSFAQCAISLSVICPKQLPKLRGIYNAGKRNLRAADPPVDNVKNPHFLVLISESFTEARSSLSRSGVTSLPSNQNPVKMDVTSAPPISAPPPASVPLANVSALARQPISVGNIPPATVKLEPTTVTSMAGPAYPHIPSVPRAASQAVPSLQTSSPMSTSQDMVSNNENVPDIKPVVSNVASSLRPLSGAAANVRILNDVAQARQALAGGTSIGLPSMGGTPMLSNMISGGMTSSVPPSQTVISSGPSGVTSVAGSMPIPVTGQVVQNSAPASFISTASNVSGNSSLAMSQPLSNLQGSVSLGQTPPGMTQGNLPVTQMAQTGMSINQNMMSAGGASGMPSGTGTMIPTPGMSQQGQPGTQPVGVNNNNTNMPLNQQTSSTIQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKAHRLIGMLFPGDMVVFKPQIPNQQQQQMQAQLQQQQQQQQQQQLQQQQQQPLQQMQQQQPLQQMQQQQPLSQLQQQQPGLMQLQQQQQQQPQQMPQMQQQQQQMVGTGMNQAYMQGAGRSQLLSQGQVSSQGPPNMPGGAFMS
Length804
PositionUnknown
OrganismHandroanthus impetiginosus
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Bignoniaceae> Crescentiina> Tabebuia alliance> Handroanthus.
Aromaticity0.04
Grand average of hydropathy-0.305
Instability index58.62
Isoelectric point8.99
Molecular weight85722.41
Publications
PubMed=29253216

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16362
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     453.12|      61|      64|     387|     447|       2
---------------------------------------------------------------------------
  190-  263 (48.25/14.08)	.....PKLRGIY.NAGkrnLR.AADP.PVDNV..KNPhflvlisesftearsslsrSGVTSLP..SNQ.N...P.VKM.........DVT.............SAPP....ISA.PPP
  268-  329 (57.43/17.99)	LANVSALARQPI.SVG.......NIP.PA..TVKLEP...................TTVTSMAGpAYPhI...P.SVP.........RAA...........S.QAVPslqtSSP.MST
  331-  383 (35.14/ 8.51)	........QDMV.SN.....N.ENVP.DIKPVVS..........................NVAS.SLR.....P.LSGaaanvrilnDVA...........QaRQAL....AGG.TSI
  387-  447 (105.93/38.61)	SMGGTPMLSNMI.SGG...MT.SSVP.PSQTVISSGP...................SGVTSVAG.SMP.I...P.VTG.........QVV...........Q.NSAP....ASF.IST
  456-  508 (60.12/19.13)	SLAMSQPLSNL..QG........SVS.LGQT.....P...................PGMTQ..G.NLP.VtqmA.QTG.........MSI..........nQ.NMMS....AGG.ASG
  511-  562 (53.90/16.49)	SGTGT.....MIpTPG...MSqQGQP.GTQ......P...................VGVNNNNT.NMP.L...NqQTS.........STI...........Q..SAQ....SKY.VKV
  570-  627 (45.68/12.99)	QRQGQPVFITRL.EGY...RS.ASA...SETLAANWP...................P...................TM.........QIVrlisqdhmnnkQ.YVGK....ADFlVFR
  628-  675 (46.68/13.42)	AMNQHGFLGQLQ.EKK...LC.AVIQlPSQTLLLSVS...................DKAHRLIG..ML.F...P...G.........DMV............................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.84|      21|      60|     680|     702|       3
---------------------------------------------------------------------------
  680-  702 (39.15/16.68)	QIpnQQQQQMQAQLQQQQQQQQQ
  733-  753 (43.69/14.28)	QL..QQQQPGLMQLQQQQQQQPQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16362 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GNSSLAMSQPLSNLQGSVSLGQTPPGMTQGNLPVTQMAQTGMSINQNMMSAGGASGMPSGTGTMIPTPGMSQQGQPGTQPVGVNNNNTNMPLNQQTSST
2) KLEPTTVTSMAGPAYPHIPSVPRAASQAVPSLQTSSPMSTSQDMVSNNENVPD
3) MGGTPMLSNMISGGMTSSVPPSQTVISSGPSGVTSVAGSMPIPVTG
4) QMQQQQPLSQLQQQQPGLMQLQQQQQQQPQQMPQMQQQQQQMVGTGMNQAYMQGAGRSQLLSQGQVSSQGPPNMPGGAFMS
5) SLSRSGVTSLPSNQNPVKMDVTSAPPISAPPP
453
290
388
724
232
551
342
433
804
263










Molecular Recognition Features






MoRF SequenceStartStop




NANANA