<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16355

Description Transcription factor CA150
SequenceMVEHGSVPISAGTVPINDASEPPQNTTAAFGFMRPSFSYLNAINMPPGSSQQLSPNPVMQSESLGSSGSLPPMSSGLSTVEQGPSAVEKSASSPVQAMLPPASSLPSHPGPAVQAPHPGNYSFNGNMEPKQTDQSQRTHVRADGFQGMGAITSASSFTQSAPRPASQPGQPNSSPSATHFASNNYSNLATWTPPAPNYQAPIGKPNTPVTPGPPGIASSLPPPNSTIPSSLDSNVFPRTFMPAAPVLSNPSIQHHSVAMYPSPSPSPQTAPPGPWLHPQQISGFARPAFPPYAAVVPAPYPIPTRGTPPVSVSLPDIQPPGVSSAVSAVGATTTSVAAGGQLSMGSGQAELRPGVDNSKDVGKAESKHEASTKELDAWTAHRTETGIVYYYNALTGESTYEKPSGFKGESDKATVQPSPISWEKLNGTDWTLVTTNDGKRYYYNTRTQLSSWQIPSEVIELRKKQDADALKAQSVSVTNANIVAEKESDPASLSIAAANAGGRDITAVRSLSVSASPSALDLIKKKLQDSGNTDSTSPNPTLSGAVTVELNGSKPVEAPLKGIQNENNKDKRKDANGDGDMSNSSSDSDDEDGGPTKEECILQFKEMLKERGVAPFSKWEKELPKIVFDPRFKAMSSHSARRALFEHYVRTRAEEERKEKRAAQKAALEGFKQLLEEAKEDIDQNTDYQKFKRRWGEDPRFQALDRKEREFLLNERVFSLRRAAQEREQAERAAAISNFKSMLHEKGDFTSSSRWSKVKDSLKSDPRYKAVKHEDREKLFNEYIAELKAAEEETERKAKAKQDEEEKLKERERALRKRKEREEQEVERVRQKARRKEAVESYQALLVETIKDPQASWTESKAKLEKDPQGRAANPHLDKSDLEKLFREHVKSLYERCVVEFRSLLNEVITAEAAAPETEGCKTIITSWSTANQLLKNDPRYNKMPRKERESLWRRHAEEIQRKQKKVHDQQGEEKSGEGKGRSSVDPGKHSSGSRRAHDRR
Length1001
PositionUnknown
OrganismHandroanthus impetiginosus
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Bignoniaceae> Crescentiina> Tabebuia alliance> Handroanthus.
Aromaticity0.06
Grand average of hydropathy-0.860
Instability index52.15
Isoelectric point8.66
Molecular weight109776.81
Publications
PubMed=29253216

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16355
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     439.79|      66|      66|     664|     729|       1
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  604-  659 (64.22/30.75)	.........FKEMLKE..RGV.APFSKWEKelpkivF.............DPRFKA....M.SSHSARRALFEH.YVR.TRAEEERKE
  664-  729 (113.74/59.64)	QKAA..LEGFKQLLEEAKEDI.DQNTDYQK......FKRRWG.......EDPRFQA....L.DRKEREFLLNERVFSL.RRAAQEREQ
  732-  796 (101.58/52.54)	RAAA..ISNFKSMLHE.KGDF.TSSSRWSK......VKDSLK.......SDPRYKA....V.KHEDREKLFNEYIAEL.KAAEEETER
  800-  835 (40.37/16.83)	AK.........QDEEE.............K......LKER.........E....RA....LrKRKEREEQEVERV....RQKARR...
  836-  902 (74.44/36.71)	.KEA..VESYQALLVET...IkDPQASWTE......SKAKLE.......KDPQGRAanphL.DKSDLEKLFREHVKSL.YERCVVEFR
  912-  959 (45.44/19.79)	EAAApeTEGCKTI.......I.TS................WStanqllkNDPRYNK....M.PRKERE........SLwRRHAEE...
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     356.09|      61|      61|     160|     220|       2
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   55-  105 (55.51/19.88)	..PNPVMQSESL.GSSGSLPPMS....SGLSTveQGPSAVEKS.A.............SSP......VQAMlPP...ASSL
  107-  145 (61.20/22.70)	SHPGPAVQ.......AP...H..PGNYS.............FN.GN........MEPKQTD......QSQR.TH.VRADGF
  160-  220 (114.15/49.02)	SAPRPASQPGQP.NSSPSATHFASNNYSNLAT..WTPPAPNYQ.AP........IGKPNTP......VTPG.PP.GIASSL
  235-  296 (73.01/28.57)	VFPRTF.MPAAPvLSNPSIQHHS......VAM..YPSPSPSPQtAP........PGPWLHPqqisgfARPA.FP.PYAAVV
  297-  348 (52.22/18.24)	PAPYPIPTRGTP.PVSVSL....................PDIQ.PPgvssavsaVGATTTS......VAAG.GQlSMGSGQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     152.52|      49|      49|     352|     400|       3
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  352-  377 (29.65/16.01)	................................RP.GVDNSKDVGKAESK.HEASTKELDA
  378-  427 (72.61/51.94)	WTAHRTETGIVYYYNALTGESTY........eKPsGFKGESD..KATVQpSPISWEKLNG
  430-  474 (50.26/33.25)	WTLVTTNDGKRYYYNTRTQLSSWqipsevielRK.KQD..ADALKAQS............
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.60|      14|      15|     549|     562|       4
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  549-  562 (23.99/12.17)	ELNGSKPVEAPLKG
  566-  579 (22.61/11.06)	ENNKDKRKDANGDG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.35|      15|      21|     476|     495|       5
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  476-  495 (17.03/17.49)	SVTNANIVAEKesdpaSLSI
  499-  513 (24.32/11.47)	NAGGRDITAVR.....SLSV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16355 with Med35 domain of Kingdom Viridiplantae
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