<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16352

Description Uncharacterized protein
SequenceMDPEEFREILSRSGVGIWALIEAAIKVASSDYGEELHSRRDKIVESLYTPATQLCQNCNGNVHDNHYYPHNNNKYNNSDNIDNNNFEDDDTNKKFSNDNNKNRNLNEDFSKSPLTPESNHRNFSGGEEEDDGDPYGGLFDDEQTKILSIKEQLEDPNQSEDAVVDLLQNLADMDITFQALKETDIGRHVNRLRKHPSNEVRRLVKQLVRKWKETVDEWVKVNQPQATSNLMADGDSPQQNIAKSQQNGHHQVPDFGYSPNPQNGSSSVERNYAEHDSKPKLQQSAPRREPLSRPPQSAPKSSSAPPNRAQRESVIDDERLNSARRRLQENYQEAQNAKKQRTIQVMDIHDIPKPKNAFFAKNRGGFQGRHHRHTAHLVPKLCQADVGAFGGTYCSTV
Length397
PositionUnknown
OrganismHandroanthus impetiginosus
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Bignoniaceae> Crescentiina> Tabebuia alliance> Handroanthus.
Aromaticity0.06
Grand average of hydropathy-1.167
Instability index54.86
Isoelectric point5.94
Molecular weight45115.77
Publications
PubMed=29253216

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16352
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      82.64|      16|      17|      74|      89|       1
---------------------------------------------------------------------------
   74-   89 (29.29/13.93)	KYNNSDNIDNNNFEDD
   94-  108 (25.74/11.46)	KFSN.DNNKNRNLNED
  116-  131 (27.61/12.76)	PESNHRNFSGGEEEDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.49|      34|      35|     243|     277|       2
---------------------------------------------------------------------------
  243-  277 (59.16/36.01)	KSQQNGHHQVPdFGYSPNPQNGSSSVERNYAEHDS
  280-  313 (60.33/32.57)	KLQQSAPRREP.LSRPPQSAPKSSSAPPNRAQRES
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16352 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) CNGNVHDNHYYPHNNNKYNNSDNIDNNNFEDDDTNKKFSNDNNKNRNLNEDFSKSPLTPESNHRNFSGGEEEDDGDPYGGLFDDEQTKILSIKEQLEDPNQSEDAVVDLLQ
2) FQALKETDIGRHVNRLRKHPSNEVRRLVKQ
3) VDEWVKVNQPQATSNLMADGDSPQQNIAKSQQNGHHQVPDFGYSPNPQNGSSSVERNYAEHDSKPKLQQSAPRREPLSRPPQSAPKSSSAPPNRAQRESVIDDERLNSARRRLQENYQEAQNAKKQRTIQVMDIHDIPKPKNAFFAKNRGGFQGRHHRHTAHLVPKL
58
177
215
168
206
381










Molecular Recognition Features






MoRF SequenceStartStop




1) KILSIKEQL
145
153