<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16344

Description "Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily"
SequenceMAKAEGRAIGIDLGTTYSCVGVWQNDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRYSDPSVQNDMKLWPFKVIPGPGDKPMIKVQYKGEEKLFSPEEISSMVLTKMKESAEAFLGHTVKNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKASRSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFAAEFKRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDAKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILTGEGNEKVQDLLLLDVTPLSLGIETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERPMTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEEIERMVQEAEKYKAEDETVKKKVEAKNALENYAYNMKNTMRDEKIGSKLNPSDKEKIEKAIEEAIEWLERNQLAEVDELEDKLKELENLCNPIIAKLYQGAGGDVPTGGADMPGAGGYGGADSGDSGAGPKIEEVD
Length654
PositionUnknown
OrganismHandroanthus impetiginosus
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Bignoniaceae> Crescentiina> Tabebuia alliance> Handroanthus.
Aromaticity0.06
Grand average of hydropathy-0.445
Instability index32.86
Isoelectric point5.23
Molecular weight71752.53
Publications
PubMed=29253216

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16344
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.73|      36|      41|     303|     343|       1
---------------------------------------------------------------------------
  303-  343 (58.09/49.56)	TR.ARFEELNMDLFR.....KCMEPVEKCLRDAkidksQVHDVVLVG
  346-  387 (50.64/32.47)	TRiPKVQQLLQDFFNgkelcKSINPDEAVAYGA.....AVQAAILTG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.00|      18|      21|      37|      54|       2
---------------------------------------------------------------------------
   15-   32 (19.59/10.25)	....TTYSCVGVWQNDRveIIP
   37-   54 (32.67/21.73)	NR..TTPSYVAFTDTER..LIG
   59-   77 (24.74/14.77)	NQvaMNPQNTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.14|      33|      54|     517|     549|       4
---------------------------------------------------------------------------
  517-  549 (52.05/34.53)	KEEIERMVQEAEKYKAEDETVK.KKVEAK.NALEN
  572-  606 (44.09/28.17)	KEKIEKAIEEAIEWLERNQLAEvDELEDKlKELEN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16344 with Med37 domain of Kingdom Viridiplantae
Unable to open file!