<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16343

Description ATP-dependent DNA helicase
SequenceMSGRDVLVIMAAGGGKSLCYQLPAVLRKGVALVVSPLLSLIQDQVMGLAALGIRAFMLTSTTNKEDEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLISVDEAHCCSQWGHDFRPDYRNLGILKTQFPDVPMVALTATATKKVQDDLMDMLHIPKCIKFVSSVNRPNLFYMVREKSSVGKSVIDGIAEYIQTSYPNNESGIVYCFSRKECEQVAKELRERGISADYYHADMDVHAREKVHMRWSNGKLQVIVGTVAFGMGINKPDVRFVVHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPADVPRQSSMVFYENAGLQNLYDIVRYCLSKRQCRRGAFFRHFAEPLQDCNGMCDNCASSNEIKELDVSDHAKSIVSMLQVMQENDQRVTMLQLVDKMKIRNKQLDPDLKREELEQLIVQLVVDRALKEEFQHTAYATNAYVTVGPLAKQVLHGKKTVKLEVDCGQRSRSINSKTHKRGKSSGLEFKLDELRKELASLDGGIFPHSVLSTQQISLLSAQKPKSLEELEKIIGKLKAEKYGPKILEEINNYESNDQMGHNLLGGGQDGSTGRPVKKLKSKNALVVIESSEDEA
Length609
PositionUnknown
OrganismHandroanthus impetiginosus
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Bignoniaceae> Crescentiina> Tabebuia alliance> Handroanthus.
Aromaticity0.07
Grand average of hydropathy-0.373
Instability index37.62
Isoelectric point8.76
Molecular weight68410.07
Publications
PubMed=29253216

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16343
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     241.02|      76|     147|      52|     133|       1
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   52-  133 (122.17/99.50)	GIRAFMLTSTTNKED...EKFIYKALEKGEGELKILYVTPEKISKSKRFMSKlEKCH...HAGRLSLISVDEAhccsqWGHDF.RPDYR
  200-  282 (118.86/79.38)	GIAEYIQTSYPNNESgivYCFSRKECEQVAKELRERGISADYYHADMDVHAR.EKVHmrwSNGKLQVIVGTVA.....FGMGInKPDVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      31.59|      10|      15|     423|     433|       2
---------------------------------------------------------------------------
  423-  433 (13.38/14.22)	DPDLKrEELEQ
  441-  450 (18.21/12.62)	DRALK.EEFQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.67|      16|      17|     529|     545|       3
---------------------------------------------------------------------------
  530-  545 (26.18/17.61)	ISLLSAQK..PKSLEELE
  548-  565 (21.50/ 8.29)	IGKLKAEKygPKILEEIN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16343 with Med34 domain of Kingdom Viridiplantae
Unable to open file!