<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16342

Description Spliceosomal protein FBP11/Splicing factor PRP40
SequenceMTPIERADATTDWREFTAPDGRRFYYNKVTKQSKWLIPDEVRLARERANLIPCEGTPTLKDVNSYASSAVSVPGTAASTPNANNFSVLAQGIVPSPVSVVPAVNPELGAPSGSSSMQGDTSNLRSEVTGLHTPREIGTSAVALETPVTVAATPTKASNTSPQEVAPSEKTVTVNEEEANKSAETSGSGGISGAEGKKVEQGPLVYESKEEAKKAFKALLESANVGSDWNWDQAMRVIINDRRYGALRTLGERKQTFNEYVAKKKKQEAEEKRARQKKAREDFKKMLQESKDLTSSARWSKAITMFEKDERFHAVERAKDREDLFDDHLEELKKKERAKALEDRKRHKAEYLEFLKSCDFIKANSQWRKVQHRLEADERCSRLEKIERLEIFQEYIRDLEMEEEEQRKLRIEEIRKAERKNRDEFRKLMEEHVATGILTANTHWRDYCMKVKDAPAYLAVSSNTSGSSAKDLFDDVIDDLEKQYLDDKEQIEEAIKNEKISLSTTWTLEDFKSALSKEISSKQLSDVNLKLIFDELLGIAKGKEEKEAKKRRRLADDIYDFLIMSKEITSSSKWEDCKPLIEERFVGEESFLREIFDKVILDLKEKANKERKRKEEKAKKEKARKDKERKYKD
Length632
PositionUnknown
OrganismHandroanthus impetiginosus
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Bignoniaceae> Crescentiina> Tabebuia alliance> Handroanthus.
Aromaticity0.07
Grand average of hydropathy-0.908
Instability index46.67
Isoelectric point7.09
Molecular weight72388.73
Publications
PubMed=29253216

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16342
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.39|      14|      17|     395|     411|       1
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  373-  386 (21.95/ 6.79)	LEADERCSRLEKIE
  398-  411 (23.44/17.52)	LEMEEEEQRKLRIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.10|      12|      17|     603|     614|       2
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  603-  614 (20.10/12.06)	KEKANKERKRKE
  621-  632 (21.00/12.97)	KARKDKERKYKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.90|      18|      18|     116|     133|       3
---------------------------------------------------------------------------
  116-  133 (31.43/23.88)	MQGDTSNLRSEVTGLHTP
  136-  153 (28.48/20.97)	IGTSAVALETPVTVAATP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.78|      15|      18|     304|     318|       4
---------------------------------------------------------------------------
  304-  318 (26.68/18.24)	MFEKD.ERFHAVERAK
  323-  338 (21.10/12.73)	LFDDHlEELKKKERAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.72|      23|      65|     212|     234|       5
---------------------------------------------------------------------------
  212-  234 (42.37/30.68)	KKA...FKALL.ESANVGSDWNWDQAM
  276-  302 (31.02/20.27)	KKAredFKKMLqESKDLTSSARWSKAI
  560-  574 (16.33/ 6.79)	......F..LI.MSKEITSSSKWE...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.17|      19|      22|      63|      83|       6
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   63-   83 (26.92/27.11)	NSYASSAvsVPGTAASTPNAN
   86-  104 (30.26/22.58)	SVLAQGI..VPSPVSVVPAVN
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      60.79|      17|      22|     484|     500|       7
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  484-  500 (26.49/19.49)	LDD.KEQIEEAIKNEKIS
  507-  524 (18.78/11.19)	LEDfKSALSKEISSKQLS
  532-  545 (15.51/ 7.67)	FDE.LLGIAKG.KEEK..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.66|      14|      22|      11|      24|       8
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   11-   24 (27.03/15.36)	TDWREFTAPDGRRF
   30-   43 (24.64/13.42)	TKQSKWLIPDEVRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.07|      10|      22|     413|     422|       9
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  413-  422 (16.89/ 9.83)	IRKAERKNRD
  436-  445 (19.18/12.18)	ILTANTHWRD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16342 with Med35 domain of Kingdom Viridiplantae
Unable to open file!