<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16338

Description "Molecular chaperones HSP70/HSC70, HSP70 superfamily"
SequenceMAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQSDAKLWPFKVIAGPGDKPMIVVTYKGEEKQFAAEEISSMVLTKMKEIAEAYLGSTVKNAVVTVPAYFNDSQRHATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKASSSGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYTTITRARFEELNMDLFRKCMEPVEKCFRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQINVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHRKKVEAKNALENYAYNMRNTIKDEKIASKLPAADKKKIEDAIDSAIQWLDGNQLAEADEFEDKMKELESICNPIIAKMYQGGAGGAGAMDEDDGPSAGGSGAGPKIEEVD
Length648
PositionUnknown
OrganismHandroanthus impetiginosus
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Bignoniaceae> Crescentiina> Tabebuia alliance> Handroanthus.
Aromaticity0.06
Grand average of hydropathy-0.422
Instability index33.27
Isoelectric point5.21
Molecular weight70862.32
Publications
PubMed=29253216

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16338
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.27|      18|      21|      38|      55|       1
---------------------------------------------------------------------------
   16-   33 (19.08/ 9.43)	....TTYSCVGVWQHDRveIIA
   38-   55 (32.67/20.73)	NR..TTPSYVAFTDTER..LIG
   60-   78 (24.52/13.95)	NQvaMNPTNTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.24|      18|      41|     337|     356|       2
---------------------------------------------------------------------------
  337-  356 (25.55/27.37)	VHDVVLVGGSTRipKVQQLL
  381-  398 (29.70/22.33)	VQAAILSGEGNE..KVQDLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.65|      17|     187|     170|     188|       3
---------------------------------------------------------------------------
  170-  188 (22.56/22.33)	GLNVMRIINePTaAAIAYG
  362-  378 (32.09/20.32)	GKELCKSIN.PD.EAVAYG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     168.00|      57|     397|     102|     164|       4
---------------------------------------------------------------------------
  102-  164 (80.57/94.36)	GDKPMIVVTykGEEKQFAAEEISSMV..LTKMK.EIAEAYLGSTVKNAVVTVpAYfndSQRHATKD
  502-  561 (87.43/74.63)	GQKNKITIT..NDKGRLSKEEIEKMVqeAEKYKsEDEEHRKKVEAKNALENY.AY...NMRNTIKD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.51|      23|      45|     427|     454|       7
---------------------------------------------------------------------------
  414-  437 (33.45/25.77)	GVMtVLIPRNTTIPTKKEQVFSTY
  443-  465 (37.07/16.64)	GVL.IQVYEGERTRTRDNNLLGKF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16338 with Med37 domain of Kingdom Viridiplantae
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