<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16335

Description "Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily"
SequenceMAGKAIGIDLGTTYSCVGVWQNDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQSDMKLWPFKVIPGPGDKPMIQVQYKGETKQFAPEEISSMVLTKMKEIAEAFLGQTIKNAVITVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFAAEFKRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDAKIDKSQVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGIETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVFEGERPMTKDNNLLGKFELKGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKEEIERMVQEAEKYKAEDEAVKKKVEAKNALENYAYNMRNTIKDEKIGSKLSSSDKNKIEKAIDEAVEWLDRNQLAEVDEFEDKLKELENLCNPIISKMYQGAAGDVPMGGGADMPGAGGSGKAGSGNADAGPKIEEVD
Length652
PositionUnknown
OrganismHandroanthus impetiginosus
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Bignoniaceae> Crescentiina> Tabebuia alliance> Handroanthus.
Aromaticity0.06
Grand average of hydropathy-0.410
Instability index31.70
Isoelectric point5.36
Molecular weight71391.34
Publications
PubMed=29253216

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16335
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.58|      36|      41|     300|     340|       1
---------------------------------------------------------------------------
  300-  340 (58.07/48.83)	TR.ARFEELNMDLFR.....KCMEPVEKCLRDAkidksQVHDVVLVG
  343-  384 (50.51/31.92)	TRiPKVQQLLQDFFNgkelcKSINPDEAVAYGA.....AVQAAILSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      77.00|      18|      21|      34|      51|       2
---------------------------------------------------------------------------
   12-   29 (19.59/ 9.91)	....TTYSCVGVWQNDRveIIP
   34-   51 (32.67/21.14)	NR..TTPSYVAFTDTER..LIG
   56-   74 (24.74/14.33)	NQvaMNPQNTVF.DAKR..LIG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.11|      29|      44|     507|     535|       3
---------------------------------------------------------------------------
  507-  535 (47.20/32.69)	NDKGRLSKEEIERMVQEAEKYKAE...DEAVK
  550-  581 (41.92/28.21)	NMRNTIKDEKIGSKLSSSDKNKIEkaiDEAVE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16335 with Med37 domain of Kingdom Viridiplantae
Unable to open file!