<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16334

Description ATP-dependent DNA helicase
SequenceMGGTLQRPTINCTASKPSAPISAWNGPEPSFSDGIDDDDILENIDVDQIVLDHYQSTPQPPTSKLPSITPHTNKDNLPSEETKLPPELCLMCSHNCKLGLCPEASNHLQAMKDTLIAISNDLIDNIDEMSSEKVESLRQERQQLKKQIQQLEKYLHTTSVNEERKMSHFSASTATPMACQYETPPTMSYRIDPTRLDSQFQANSGAQGFDRWGASSVPFYSADGFGISTAPLEREQYIPKYIEINYIDGSTDKKWSSREFAWTKELEANNKKVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANMEWIEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLESLHARESLARIVIDEAHCVSQWGHDFRPDYQGLGILKKKFPTVPVLALTATATISVKEDVVQALGLENCIVFRQSFNRPNLRYSVVPKTKKCVEDIDKFIKENHFDECGIIYCLSRMDCEKVAEKLQEYGHKAAFYHGSMESTQRAMIQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQPSSCVLYYSYSDYIRVKHMISQGVIEQTPFASGYNRANMAPSGRLLETNTENLLRMVSYCENDIDCRRLLQLIHFGEKFNSLNCQKTCDNCSKNQTCVEKDVTEIAKQLVELVKITGQHFSTAHLLEVYRGSLSQFVKKHRHDKLSLHGAGKHLAKGEASRVLRHLVIEDMLVEDVKKSDIYGSVSSVVFQVNESKACNLFAGDQRIKLRFPSSVKASKSGRPEATPAKGSLMSEKQSSPQMDTPAQPQPEVDLNLSAKLYTSLRMLRTILVKEAGEGVMAYHIFGNATLQQISKRIPRSKDELLEINGIGKAKITKYGDRVLETIEATIRDYYKDKNSSSSNDSSESKRRRRTTNVSSNGHQDNDDFLESTGRSKKRLVKKLNKTSEAVNLACPPYNNNQYEDIDFDDSLFDVDVSEVDQVGYGGRVLPSWSATGNVVHG
Length1035
PositionUnknown
OrganismHandroanthus impetiginosus
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Bignoniaceae> Crescentiina> Tabebuia alliance> Handroanthus.
Aromaticity0.07
Grand average of hydropathy-0.487
Instability index49.48
Isoelectric point6.59
Molecular weight116188.45
Publications
PubMed=29253216

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16334
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     129.31|      44|     417|     372|     499|       1
---------------------------------------------------------------------------
  372-  415 (73.84/16.90)	KLLYVTPEKVA.KSDVLLRQLESLH.ARESLARIVI......DEAH..CVS.QWG
  505-  559 (55.47/127.91)	CLSRMDCEKVAeKLQEYGHKAAFYHgSMESTQRAMIqkqwskDEINiiCATvAFG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.28|      20|     417|       3|      22|       2
---------------------------------------------------------------------------
    3-   22 (36.97/25.71)	GTLQR..PTINCTASKPSAPIS
  426-  447 (28.32/17.94)	GILKKkfPTVPVLALTATATIS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.82|      27|     102|     896|     923|       5
---------------------------------------------------------------------------
  896-  923 (39.85/36.35)	DELLEINgIGKAKITKYGDRVLETIEAT
 1003- 1029 (47.97/37.78)	DSLFDVD.VSEVDQVGYGGRVLPSWSAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.07|      32|     748|      47|      85|       7
---------------------------------------------------------------------------
   47-   80 (54.51/28.63)	DQIVLDHYQSTPQPPTSKLPSITPhtNKDNLPSE
  798-  829 (53.56/22.58)	DQRIKLRFPSSVKASKSGRPEATP..AKGSLMSE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16334 with Med34 domain of Kingdom Viridiplantae
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