<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16330

Description Uncharacterized protein
SequenceMAADAIVSDSGALHVAGVPIVNPSTVVVWEVTPGPGNGFQATPKASVNNEVPPSLNPPSWDGFAPLAAYLFSWQEYLLLEAKQGKKQTEQDYSDMVALHCSPVSNFSAYVSPEAAAHSSATTTWGSGVTAVAFDPTRGGSVISVVIVEGQYMSPYDPDEGPSVTGWRVQRWESSVENVVIHQMFGNPGSNFGGQAPKQTVWVSKVIKCIPAPNEFKCAGAAPTPQTCDGKNISESGVEIAKRVSFDPFDLPSDVRTLARIVYSAHGGEIAVSFLRGGVHVFSGPDFTVVDSYQINVGSAIAAPAFSSTSCCSASVWHDTSKDCTILKIIRVLPPPVPSSQAKANSATWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTTAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVQEPWQASGETLSGIDPEAMAVEPALVLSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAASAGTGGSRNLVTSPTQSTSTPSTTQGAQGGTTSSTGSTQMQAWVQGAIAKISSTTDGAPSSAPNPISGPSTFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRTQLPRFIGAAQRNADSSIQKPQLGVAGKSEETNSITAKPTSTVIRAEETQVSRPGQVANGAKGPEEGPTSRSRLGSGNAGQGYTFEEVKVLFLILMDLCRRTAGLGHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPAEEWHKRNMFGGPWSDPDDMSLSEDGTKFGSSMDLLDSGSSHNGDIYSGTQTLWPRKRRMSERDAAFGLNTSVGLGAYYGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTSAFASPGGGNPPNQNEKETWWISRWAYGCPMCGGTWVRVV
Length952
PositionTail
OrganismHandroanthus impetiginosus
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Bignoniaceae> Crescentiina> Tabebuia alliance> Handroanthus.
Aromaticity0.08
Grand average of hydropathy-0.154
Instability index40.20
Isoelectric point5.99
Molecular weight101900.71
Publications
PubMed=29253216

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16330
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      61.27|      15|      16|     639|     653|       1
---------------------------------------------------------------------------
  639-  653 (23.84/15.96)	IGAAQRNADS.SIQ.KP
  655-  671 (15.45/ 7.48)	LGVAGKSEETnSITaKP
  672-  686 (21.98/14.08)	TSTVIRAEET.QVS.RP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.34|      14|      15|      97|     110|       2
---------------------------------------------------------------------------
   97-  110 (25.54/13.19)	ALHCSPVSNFSAYV
  115-  128 (24.80/12.59)	AAHSSATTTWGSGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.39|      25|     110|     582|     622|       3
---------------------------------------------------------------------------
   16-   43 (42.85/14.84)	AGVPIVNPSTVVVWEVTPGPgngFQATP
  582-  606 (49.54/49.77)	APNPISGPSTFMPISINTGT...FPGTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.85|      16|      17|     532|     547|       4
---------------------------------------------------------------------------
  532-  547 (30.03/15.30)	TSPTQSTSTPSTTQGA
  552-  567 (28.82/14.40)	TSSTGSTQMQAWVQGA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.75|      11|      27|     233|     245|       5
---------------------------------------------------------------------------
  233-  245 (14.42/14.12)	SESGVEIAkrVSF
  263-  273 (19.33/10.91)	SAHGGEIA..VSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.90|      13|     112|     500|     512|       6
---------------------------------------------------------------------------
  500-  512 (26.05/17.97)	HFITRLRRYASFC
  615-  627 (26.85/18.72)	HFLHRLCQLLLFC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.94|      16|     110|     186|     201|       7
---------------------------------------------------------------------------
  186-  201 (34.31/15.53)	NPGSNFGGQAPKQT......VW
  295-  316 (20.63/ 6.75)	NVGSAIAAPAFSSTsccsasVW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.43|      10|      17|     452|     461|      10
---------------------------------------------------------------------------
  452-  461 (18.49/11.96)	INPSALVQEP
  472-  481 (18.94/12.46)	IDPEAMAVEP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16330 with Med16 domain of Kingdom Viridiplantae
Unable to open file!