<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16329

Description Uncharacterized protein
SequenceMANTSASLDKWREYFRGANSDIFDIIEHAIMVAASDCPYDFKLKRDRIAEMLFACKATRCYGCDRIQLAVPNGDGLDKSEDKYKSEIEAGGSKDTKESKVNSSSRDDDDHREVMEMNVNQVTNYSYGDAEALTDEIEEEYLYYEEVQRIKEVLDNSEEESELMLFDYLRKLQLMPLSVETLKATEIGKSVNALRKRGSKEIRNLARTLIEYGRYLMLHNFVFFDGMDDDGNPRNVGEFIKNRESGRKPSFEKKDTRNWKVESPVDSRAPPKGKKIEQRRNLEPTLKKQVPPPKPNRPSGGESGPGRPKPLSSESGPGRPKPAIKPKANNEGRIEQKSDKSTIQKKLMPPQVEKSRGNNDGSVRMNLEAAKRKLQERYQEAENAKKQRTIQVVELHDLPKQSLARNQHMRPGNHNRNWANGRR
Length422
PositionUnknown
OrganismHandroanthus impetiginosus
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Lamiales> Bignoniaceae> Crescentiina> Tabebuia alliance> Handroanthus.
Aromaticity0.06
Grand average of hydropathy-1.089
Instability index47.52
Isoelectric point9.01
Molecular weight48292.78
Publications
PubMed=29253216

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16329
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     122.45|      25|      26|     290|     314|       1
---------------------------------------------------------------------------
  269-  289 (24.51/10.29)	......PP.KGKKIEQRRNLEPTLKKQV
  290-  314 (45.72/25.85)	PP..PKPN.RPSGGESGPGRPKPLSSES
  315-  340 (30.88/14.97)	GPgrPKPAiKPKANNEGRIEQK..SDKS
  347-  363 (21.35/ 7.98)	MP..PQVE.KSRGNNDGSVR........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.64|      13|      15|      73|      85|       2
---------------------------------------------------------------------------
   73-   85 (22.79/13.10)	GDGLDKSEDKYKS
   90-  102 (21.85/12.29)	GGSKDTKESKVNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      34.74|      12|      24|     130|     141|       3
---------------------------------------------------------------------------
  130-  141 (20.32/14.36)	EALTDEIEE......EYL
  151-  168 (14.42/ 7.99)	EVLDNSEEEselmlfDYL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16329 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NPRNVGEFIKNRESGRKPSFEKKDTRNWKVESPVDSRAPPKGKKIEQRRNLEPTLKKQVPPPKPNRPSGGESGPGRPKPLSSESGPGRPKPAIKPKANNEGRIEQKSDKSTIQKKLMPPQVEKSRGNNDGSVRMNLEAAKRKLQERYQEAENAKKQRTIQVVELHDLPKQSLARNQHMRPGNHNRNWANGRR
2) SEDKYKSEIEAGGSKDTKESKVNSSSRDDDDHREVM
231
79
422
114










Molecular Recognition Features






MoRF SequenceStartStop




NANANA