<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16308

Description Putative F-box-like/WD repeat-containing protein TBL1XR1
SequenceMHTNHNEPMEVDSGVEIPASKATVLRGHELEVFSCAWNPCQDLLASGSGDSTARIWNLNENASGSPQHMVLRHCIRDGGQEVPSNKDVTSLDWNCDGTKLATGSYDGHARIWSTEGHLISTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAQTGECKQQFPFHTAPALDVDWQNNNSFASCSTDQCIHVCKLGVEKPVKTFQGHTNEVNAIKWDPNGSMLASCSDDMTLKIWSMKHDTWVHDLKAHLKEIYTIKWSPCNPNTSLMLASASFDSTVRLWEVERGLCIHTLTRHQEPVYSVAFSPDGKYLASGSFDKCVHIWSTQTGSLVHSYRGTGGIFEVCWNHRGDKVGASASDGSVCVLDLRK
Length369
PositionTail
OrganismStichopus japonicus (Sea cucumber)
KingdomMetazoa
LineageEukaryota> Metazoa> Echinodermata> Eleutherozoa> Echinozoa> Holothuroidea> Aspidochirotacea> Aspidochirotida> Stichopodidae> Apostichopus.
Aromaticity0.08
Grand average of hydropathy-0.400
Instability index28.70
Isoelectric point6.24
Molecular weight40784.36
Publications
PubMed=29023486

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16308
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     365.64|      39|      40|     181|     219|       1
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   17-   58 (42.26/20.32)	IP..ASkatVLRGHELEVFSCAWNP........cqdlL.ASGSGDSTARIWNL...
   82-  108 (23.90/ 8.76)	VP.......S....NKDVTSLDWN....cdgtK....L.ATGSYDG..H.......
  117-  158 (50.04/25.22)	HL..IS...TLGQHKGPIFALKWNK....kgnY....I.LSAGVDKTTIIWDAQTG
  159-  199 (53.81/27.60)	EC..KQ...QFPFHTAPALDVDWQN.....nnS....F.ASCSTDQCIHVCKLGVE
  200-  241 (53.15/27.18)	KP..VK...TFQGHTNEVNAIKWDP.....ngS...mL.ASCSDDMTLKIWSMKHD
  242-  285 (51.71/26.27)	TW..VH...DLKAHLKEIYTIKWSPcnpntslM....L.ASASFDSTVRLWE..VE
  286-  329 (49.91/25.14)	RGlcIH...TLTRHQEPVYSVAFSP.....dgK....YlASGSFDKCVHIWSTQTG
  330-  368 (40.86/19.44)	SL..VH...SYRG.TGGIFEVCWNH....rgdK....V.GASASDG..SVCVLDLR
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16308 with Med16 domain of Kingdom Metazoa
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