<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16303

Description Cell division protein kinase 8 (Fragment)
SequenceNQHNILVMGEGPDRGRVKIADMGFARLFNSPLTPLANLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTNTPYHRDQLDRIFMVMGFPQDKDWEDIKKMPEHGTLLKDFKKANYAHYSLIRYMDKHKVKADSKAFQLLSKLLIVDPMKRITSELAMEDPFFKEEPLPTLDVFDGKTIQYPKREFLTDEDNEEKSVSKQKTSSSGHSSNAKRIRSSGQSGGMMQQDYQSSQQKHMMSGYQGGSGQGNHNQGQGNRMYTSGSGSHTGHSKMTHGSQHHQSHSQHHQRQHQQHPHRY
Length316
PositionKinase
OrganismStichopus japonicus (Sea cucumber)
KingdomMetazoa
LineageEukaryota> Metazoa> Echinodermata> Eleutherozoa> Echinozoa> Holothuroidea> Aspidochirotacea> Aspidochirotida> Stichopodidae> Apostichopus.
Aromaticity0.09
Grand average of hydropathy-0.868
Instability index46.63
Isoelectric point8.98
Molecular weight36218.40
Publications
PubMed=29023486

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process
cell division	GO:0051301	IEA:UniProtKB-KW









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16303
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.08|      16|      18|     237|     252|       1
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  237-  252 (30.61/16.24)	SGQSGGMMQQDYQSSQ
  258-  273 (31.47/16.88)	SGYQGGSGQGNHNQGQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16303 with CDK8 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PKREFLTDEDNEEKSVSKQKTSSSGHSSNAKRIRSSGQSGGMMQQDYQSSQQKHMMSGYQGGSGQGNHNQGQGNRMYTSGSGSHTGHSKMTHGSQHHQSHSQHHQRQHQQHPHRY
202
316










Molecular Recognition Features






MoRF SequenceStartStop




1) GNRMYTSGSG
2) HTGHSKMTH
3) KRIRSS
4) MQQDYQSSQQKHMMSGY
274
285
232
244
283
293
237
260