<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16294

Description Putative mediator of RNA polymerase II transcription subunit 23
SequenceMEQPLTTANMSLSAAAALEKKVQSILNDVLSVTAIEEAFTGFLVHSEEEEQNKKKLCRDMFCQFWKAHAQQSGETILNIYVTHMFQLHSQKISLLFDILSYCVEKGYIQAKMVCDALLSNPNLDYKSKEVWRRSFQLIYGIIIKHIDYKGCRDLLKVLLEKIQLIPASVNIAYKNEMTQIKQVIALILDRQNFLLPAYFAVTEIQVIFPDSNLETGHWIVGEMLGAYVESFRAVARMVLITGRPHLLPIIGHSNTSGHAWKLDPHTLTFVLKGNLPFDKDQMKPQFELIRYALKQPYSRDTVCNIISLNKQQKQRSAVLEGQLAELVMVAMERSEEDMTAPADRYGTPYTPSGNTCPVSSSSLHSSSLSTFQTWLNYSTRR
Length381
PositionTail
OrganismStichopus japonicus (Sea cucumber)
KingdomMetazoa
LineageEukaryota> Metazoa> Echinodermata> Eleutherozoa> Echinozoa> Holothuroidea> Aspidochirotacea> Aspidochirotida> Stichopodidae> Apostichopus.
Aromaticity0.09
Grand average of hydropathy-0.124
Instability index44.24
Isoelectric point7.63
Molecular weight43317.59
Publications
PubMed=29023486

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16294
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     112.32|      35|      51|     159|     194|       2
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  159-  194 (52.06/41.28)	LEKIQLIPASVNIAYKNEMTQIKQVIaLILDRQNFL
  213-  247 (60.26/43.17)	LETGHWIVGEMLGAYVESFRAVARMV.LITGRPHLL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16294 with Med23 domain of Kingdom Metazoa
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