<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16268

Description Putative F-box-like/WD repeat-containing protein TBL1XR1
SequenceMSISSDEVNFLVYRYLQESGFTHSAFTFGIESHISQSNINGALVPPAALISVIQKGLQFVEAEISVNEDGSVIDTRSLDSLSLIDAVMPDIISNRKAELSKQAASNSQNIIKDENSIQVKVEETANNSVQQTNHNEPMEVDSGVEIPASKATVLRGHELEVFSCAWNPCQDLLASGSGDSTARIWNLNENASGSPQHMVLRHCIRDGGQEVPSNKDVTSLDWNCDGTKLATGSYDGHARIWSTEGHLISTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAQTGECKQQFPFHTAPALDVDWQNNNSFASCSTDQCIHVCKLGVEKPVKTFQGHTNEVNAIKWDPNGSMLASCSDDMTLKIWSMKHDTWVHDLKAHLKEIYTIKWSPCNPNTSLMLASASFDSTVRLWEVERGLCIHTLTRHQEPVYSVAFSPDGKYLASGSFDKCVHIWSTQTGSLVHSYRGTGGIFEVCWNHRGIKWVPVRQMDLFVSWTSGNDHQQATAPILAPSLTTWNKHSVFVRPSECQRIRAA
Length533
PositionTail
OrganismStichopus japonicus (Sea cucumber)
KingdomMetazoa
LineageEukaryota> Metazoa> Echinodermata> Eleutherozoa> Echinozoa> Holothuroidea> Aspidochirotacea> Aspidochirotida> Stichopodidae> Apostichopus.
Aromaticity0.08
Grand average of hydropathy-0.331
Instability index37.64
Isoelectric point5.92
Molecular weight58997.54
Publications
PubMed=29023486

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16268
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     382.88|      39|      39|     310|     348|       1
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  143-  168 (22.26/ 9.46)	......................GVE........IP..ASkatVLRGHELEVFSCAWNP
  189-  223 (34.68/19.31)	E.N.ASGSPQHMVlrH.CirDGGQE........VP.......S....NKDVTSLDWN.
  228-  265 (41.42/24.65)	K.L.ATGSYDG....H.........ariwstegHL..IS...TLGQHKGPIFALKWNK
  269-  307 (52.99/33.81)	Y.I.LSAGVDKTT..IIW..DAQTG........EC..KQ...QFPFHTAPALDVDWQN
  310-  348 (63.96/42.51)	S.F.ASCSTDQCI..HVC..KLGVE........KP..VK...TFQGHTNEVNAIKWDP
  351-  390 (58.04/37.82)	SmL.ASCSDDMTL..KIW..SMKHD........TW..VH...DLKAHLKEIYTIKWSP
  398-  436 (53.26/34.03)	M.L.ASASFDSTV..RLW..E..VE........RGlcIH...TLTRHQEPVYSVAFSP
  439-  476 (56.27/36.41)	K.YlASGSFDKCV..HIW..STQTG........SL..VH...SYRG.TGGIFEVCWN.
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16268 with Med16 domain of Kingdom Metazoa
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