Description | Putative mediator of RNA polymerase II transcription subunit 25-like |
Sequence | MQCPGKFSSSERNVNMSVISPRKLYELQQLYDKACGELQVLTTKEYALDQRHLILLRGYELQERSPAVELKEVKQDLLSPRKQPNNLVSMSAASSVAVASTSMNFTPSNVNTLLTAQSILSHKGQQQQQPIPTQAAVTINMKPKMSVASMQRDVQDKQQVAGSIAGQVQPNQTMVQQQAQQQLQHQQQQQQQHQQQQMSVLPALQQQQQAVRLPQQQQQQHAGIQHVHQAIAQQPQQLQSVMQPQQIPNIQQPQLSLAQLPGKKGLTKEGFLKMMQALPPEARKKFIEDLKVRKNQQQQQQVTSQAAGLVNSQTAASSSAVDLIQPNITIAKPQSSQNIGAATATVQGIPTSTTAGLAPMSAVAAARDVVRIAGVTVSNSRLPNQGGQGFNPQQPNNPLLSNHLQQSGMPQQQQTSLQQQQQQQQASLQQQQQTTLQQQQNVNLQQQQQNAMQQQPGMPQQQANLQQDQLLNQQATMPSVSNMVFQPDQAGNVMSQTIVQQNNPPLVAMNPVNRAGVARPLKILWNGVLEWHERTKTSTMTQDQRIQHCINCSVSADPIPTSTATVGQRNLPCRSFHLNFWVLTLRHGDTSSGFFHSQFAGCIHLSSEVQSDTSIRVLLLWYIKASDQFKGRIPKDQAGFINNFRELIKKHQQEQQQKQLQQQQQQALIGARPQMQVPGMIQRPANMTQVMGPRNPIPPVAASNGQVLSQKDLQEFVKRLQQQKQQQHQQQQQQQQQQQVQQQQSNQQLLQQAQQMSQVGIRPQGMVGQQQQQQVPTQTQQLPSNNAQLKNLLLNQAQAQSQGGQLQWNQPQQLGQQQQLGQQQQLGQQQQQLGQQQQQQNLLLQPQQLQQAAVAMGQQQRMPQRTMSQVMQQGGGFAQGITVQGGSMGGQRAILQQGMNPQGMQGMGKPMPRQQQQQQQQQQQQQGGKGGLRDDLSLMDLLQP |
Length | 944 |
Position | Unknown |
Organism | Stichopus japonicus (Sea cucumber) |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Echinodermata> Eleutherozoa> Echinozoa> Holothuroidea> Aspidochirotacea> Aspidochirotida> Stichopodidae> Apostichopus. |
Aromaticity | 0.03 |
Grand average of hydropathy | -0.817 |
Instability index | 73.73 |
Isoelectric point | 10.15 |
Molecular weight | 105244.48 |
Publications | PubMed=29023486 |
Annotated function |
|
GO - Cellular Component | nucleus GO:0005634 IEA:UniProtKB-SubCell |
GO - Biological Function | |
GO - Biological Process |
Binary Interactions |
Repeats | >MDP16266 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 4| 174.84| 27| 27| 167| 193| 1 --------------------------------------------------------------------------- 167- 193 (52.45/11.12) QV.....QPNQTMVQQQAQQQLQHQQQQQQQH 397- 426 (40.54/ 6.18) NPllsnhLQQSGMPQQQQTS.L.QQQQQQQQA 427- 450 (40.17/ 6.03) SL.....QQQQTTLQQQQNVNL....QQQQQN 828- 852 (41.68/ 6.65) QQ.....Q..QQLGQQQQQQNLLLQPQQLQQA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 421.22| 146| 618| 124| 326| 4 --------------------------------------------------------------------------- 17- 206 (121.98/31.94) ......................S.........VISPRKLYEL......QQlydkacGELQV..LT.TKEYALDQRHLILL..RGYELQERSP...AVELKEVKQ..DLLSPRK...QPNNLV.SMSAASSVAVAStsmnFTPsnvntlltaqsilshkGQQQQ.........Q......PIPTQAaVTINMK..PkMS.VASmQRDVqdkQQVAG.SIAGqvqpnqtmvqqqaqqqlqhqqqqqqqhqqqqmSVLPalQQ 219- 385 (214.30/55.22) QQHAGIQHvHQAIAQQPQQL.QS.........VMQPQQIPNI......QQ......PQLSLAQLP.GKKGLTKEGFLKMM..QALPPEARKK...FIEDLKVRK..NQQQQQQvtsQAAGLVnSQTAASSSAVDL....IQP..........nitiakPQSSQnigaatatvQ......GIPTST..TAGLA..P.MSaVAA.ARDV...VRIAGvTVSN................................SRLP..NQ 453- 572 (84.93/ 8.97) QQQPGMPQ.QQANLQQDQLLnQQatmpsvsnmVFQPDQAGNVmsqtivQQ....nnPPL.VAMNPvNRAGVARP..LKILwnGVLEWHERTKtstMTQDQRIQHciN..................................................................csvsadPIPTST.ATVGQRnlP................................................................. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 145.03| 49| 95| 669| 723| 5 --------------------------------------------------------------------------- 692- 789 (52.66/17.35) GPRNPI..PPVAAS.NGQ..VLSQ....KDLQEFVKRL....QQQkqqqhqqqqqqqqqqqvqqqqsnqqllqqaqqmsqvgirpqgmVGQQQQQQVPtqtQQlPsnNAQ.L 790- 871 (48.39/11.27) ..KNLLlnQAQAQS.QGG..QLQW....NQPQQLGQ......QQQ.........lgqqqqlgqqqqqlgqqqqqqnlllqpqqlqqaaVAMGQQQRMP...QR.T..MSQvM 876- 925 (43.98/ 6.40) GFAQGI..TVQGGSmGGQraILQQgmnpQGMQGMGKPMprqqQQQ............................................QQQQQQQ................ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 66.89| 19| 26| 573| 591| 7 --------------------------------------------------------------------------- 573- 586 (21.47/14.53) .....CRSFHLNFW.VLTLR 587- 606 (30.92/24.32) HGDTSSGFFHSQFAgCIHLS 610- 621 (14.49/ 7.30) QSDTSIRVLLL..W...... --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) MGKPMPRQQQQQQQQQQQQQGGKGGLRDDLSLMDLLQP 2) RAILQQG | 907 892 | 944 898 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab