<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16255

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMSDSFNLPLRPLTEKRERPDPLPVEIAQINAQYGSFRDVTEDGLRAKIEADKNKDPWFDEEENDNASVDEDTTERLDQLYKRRAAITQFALQAHMEAMFALDFVSLLLSKHTPRQAEMSMSAYLKQVAPLGSLNSEIVNPPPKPESAARDTKNVSRGWRLQNFNSAASKLLDSATRLEAEVASETKYWDEVLAVKEKGWKVSRLPRERQALGVQYGFLEATPIFRDRGLAALRRTNDGSLILDKGLIPLKARTVRVRVRSRGQITGCSKNRPGSDNTESIESRILQARDTVYEEELFHELVREARILGSQGVTTRQNLVQFPVSEEQEVLLDLIDDDQISPEDDVVSSNEHAVVADALAHAIRILLAYAHRQNLRRRTQLPTPLTPKRRQTPEYQLLRPVMAYLQHSSHVRWLESLLNDINQILKSAGITCDFTATPFSSLSLRRTINGLPKVEALVQEFLLPYESTFSAQLVTPQNSFRVKVRTNVTTPPLGTHYEISVNMPQYPDVRPPNRIGLQDEAASILTHFVLLDILTAITHAKGSSVKGIKQETGRLLTWQAAYPHNGELLALSSTGQHKKMKVSLSRHELTVRVYSVRGIDGFGKPAVDKTPAMRSQTWKSDGTPDQPNLMDFIAEVSKE
Length638
PositionHead
OrganismAspergillus arachidicola
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Eurotiomycetes> Eurotiomycetidae> Eurotiales> Aspergillaceae> Aspergillus.
Aromaticity0.06
Grand average of hydropathy-0.478
Instability index47.38
Isoelectric point7.27
Molecular weight71805.56
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16255
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.62|      29|      32|      14|      44|       1
---------------------------------------------------------------------------
   14-   44 (46.50/35.45)	EKRERPDPLPVEIAQINAQYGsfRDVTE..DGL
   49-   79 (47.11/29.17)	EADKNKDPWFDEEENDNASVD..EDTTErlDQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     163.99|      50|     174|     312|     361|       2
---------------------------------------------------------------------------
  312-  361 (81.31/47.49)	VTTRQNLVQFPVSEEQEVLLDLIDDDQISPEDDVVSSNEHAVVAD...ALAHA
  487-  539 (82.67/48.39)	VTTPPLGTHYEISVNMPQYPDVRPPNRIGLQDEAASILTHFVLLDiltAITHA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.87|      14|      33|     362|     375|       4
---------------------------------------------------------------------------
  362-  375 (24.08/15.97)	IRILLAY.AHRQNLR
  397-  411 (21.79/13.80)	LRPVMAYlQHSSHVR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.59|      15|      33|     225|     239|       5
---------------------------------------------------------------------------
  225-  239 (25.75/15.91)	RDRG.LAALRRTNDGS
  259-  274 (23.84/14.22)	RSRGqITGCSKNRPGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.66|      21|      31|     132|     152|       6
---------------------------------------------------------------------------
  132-  152 (36.03/27.52)	SLNSEIVNPPPKPES.AARDTK
  165-  186 (26.63/18.06)	SAASKLLDSATRLEAeVASETK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16255 with Med17 domain of Kingdom Fungi
Unable to open file!