Description | Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MGFLCYLFFDNSAKVSSQQSQPFYSEASKTPSGSGPVRDSTEDMASSKEGEKDASRKVKVPKRPEVNNGGSLEDCISNVFSLLELPGIKWKCFRPKLNAPRGVVPLTSDLVLKAYSRCLTDGILCTWRRKPSPPTGNNELLPPTHYFSNDSPKELWVFWYDAEPTALAKYCEGLDSDEELSSANQMNIVSYEVRTILFKALHVVLERDLTKDGFVRFGRWFTMPLVARDHYLHCMYPSHSPAIRFNFFVHGTSTICASIQAQRQPTLIKLARRHFECKTPKRFPVVVGPWSMRGYLIADQMTLLADPKIQEAAEKEWNQWKEYLQLEEKEPENVAEERQKTPEAEPSAPPQTTRVLLASSSDEDQEKSGGEEKNEEVSQKIRWMFEPDLRQDKPKEETAAEKEKRMAAREVRRLRRQRREERRREQEKQRRADDNQEDYDSDVVTDQEEDEAGKEEIVNNDVPKMILIEIDNVRLLYPSKFVCITVEEDRQMLESMGFKCHPMPQELQVPGRRPRNKNVVNMSNPLLSTMAVYQYVQNEKRAEREHFYPRNKPVEIEPLSNFEFLSNPEAARRVKPPKSPTFLSWKSQRANHFDTTDIFVNRLFENADTFDETPRPIKFACLSYQFIRRKWKWIRKKEIKFGGKAKKRFGIGSPQNFALNMMKFREKRKEYQPYHRKRPVKSVKEKKKKAKRKVKKFVKYANPNQFLASISRTKRKFNAWKQKMNGPPPKKGPAKKEAAADKDKDKDKEKDKEKDKEKDKEKDKEKDKEKEKDKEKDKENEDDPFVMDKVSQLDWANFSEDETNGNSFADPTEDLYNPAGGELEEGDEISNESPDEKTPEGSPNGSPRPKEDIEPFVPITHPAAKPSNIEWDLGREVDDMTEELEYVPKEDHITQDPKKVKNGHIPISEFAKDNQFYHGEICRLGLRGYKKICAERDREEAARRMKWLQLYREKAEKRNIKTARQCHRDYLRQIAKRCLRKALRRLRITAKKDALAPPPPKPKPVDPVLKKKEDAKKFEMSMKMMERDLGNLDMSAFCQIREKAGPHGVQSTAGYMKPNYTNSPHGSFDHDSESEIDEQRTGLGEGTSDQYQDGESVDMIDIERELANDPSSYLFNAGHIRTLGEHIGPDGMLSPPASNEMPKGGPLSVGPASIESQGLNQIYPTPPSVQMLQADASQAHSPSIGGKFRSTANDDIERAVAPGKTIVDVEIEDIETRNMQRWSKIANQSKLSKFLVASRDNPILKGRKKKYDTPATNKFDIQCQVERVTVPMAYKSMVTRNFECAPPHTFAELIRQSRTGIKKYTRPLQIQSTLARPPPGATSPVPPPTPMFNPHTLPLHHTSPFSAGPMSHHSMGPPAYPPTPGPYPPTTPTYPGMTPRPGSSYGPGYPNHHQMMPPGYPNQMGQMGGMNGMGGMPGMPGMGPMGMQRQFSNPQMYQHHQMMRMQQMRQMQAGQSGYGAPGVPQYPQQSPGGPGGFGVPSGPSSVQRLNNFVNQSQFGPSSGPQNPYGAQMIPQSPSFNQPYPGMGNQMMSPMQQHQFQQQQMMQQQQQQQQHQQQQQHQLQLQRSQAHQIQHQPNQQTIQQTPEQLQIQQSQQVQAVFQQLPDREKRKYQRRQIQLMNGLMPTSLQPASIKALKNPPDANIPYKRQDIIYNPPNPAHPRGDSLTIAIVLSDTLLDLHFDSVFDACPICSCSVSIRSRDLGMYITPHAVLSSREIGETNKREYTTGTWSGFHVNSATSCTCGFSAIRHRYLSCCAGLFDEDADEATASEHANASVIPPLFSRNTIKTRDMMWFDPQSVHDLALTYQIRQMAFSNSLGKAVSQMATEKEHRRNITNAVDIGTDITVPTEYVLSHVDTLELMMLGMSALGPMQTPETTGSQLPPQSKYLSYFHPWGFQTANEIAELESSEWVDLLDIVTPTLESSMKQARRPPAEIPFVIEGPMTWKQVVTKAIRGKPPTDEDEDFSLAEPVPAVMRALEQEAVRAAPNIEQYYDQAELGPVDQPKDVMYITIIPDNDDIYERTVKFMDTMTETYERMRLGRHIPFPVSTGTASRYREVLKDYQSRYPYQEQHQQCVDATNNHLRAVPKELASNPNPLNTDPEEWNKRLKRKLELSEELKKADEHPAPPSTQSENSEGNAAAPAATPAAETLSSIFAEDAFVEPENRNSEEAPTTTERPPNSFPYRVTNWHEKDDDTFEDPPEVHDILPEGFYEREGILRIGKPLEPSRISHTVVSTREFDNMTQHLSDAQGFVSKLRLFLQQMEDLVFHTLIESNEAFERKGYRYQMAVEGRLKRQKHRRDIEEERLRYEAAKVQDEADKREKIDEADLLLGAEVGEETPSPWVDDELEEKKRKKQKENEQYPAEEPQAPSPVPAGMIHIPETLSEQERKVQPTLADMFADPSTVAPINAQNIPWKQRDTRVANPFPYSNQPPVAFEAAGSNDTDAYSTLPHVIVLYVVNPFSYGAEGQSALHMRIALLSFIRAYNSIVGRLPFTKRTQLQLEIIGMESLDDMVKGIPDYLNDSQVPFDILHDYPVRNERPSESGQEAAARSLSVAVYTHPRVFTPEVYKAVSARCMTAFGPGSQLINTINNIEKMNQDAFYQMTKRSKTALNNMDGYMGMMGSHQVETKGHISYRIPSNIVCLAPPPAIYQMDEEGKPILNQLDEQTLFISYCLVGTEYLVATATDSQGKLIDNCIANMKPRRLHNQVYRYKNKTQILDGMGKLWSFILGVMSSDIKNWRLVVGRLGRIGHGEFRAWTHLLNKTSLLRYSSSLKDICGACRSMPSAIGTPAILSACLITLEPEPSIRIMPEFHDIDESIKKNLIFQTPGDLSCTHILTFPVGTEINLEVQDQAADTKGDENWEFGDLDIMEGLDDGDTEIMKDLGLETPSSAAIRQTGGVSMFFSEDSSSIEIQNQPLASGYYISTAPAPELPSWFWATCPSAKRHSPVHLKSSLHINISEVKNDDIAMESAKDKEKEKEEKDIHPLESRQTEEVLRHVLESYNALSWLNLNRQTGDRYSCLPIHVQHLLRLYHSVARLLV |
Length | 3042 |
Position | Middle |
Organism | Caenorhabditis nigoni |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis. |
Aromaticity | 0.08 |
Grand average of hydropathy | -0.773 |
Instability index | 57.74 |
Isoelectric point | 6.24 |
Molecular weight | 345487.39 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP16226 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 86.62| 17| 17| 1358| 1374| 1 --------------------------------------------------------------------------- 1357- 1373 (35.59/14.82) PPAYPPTPG.PYPPTTPT 1374- 1391 (28.39/ 9.99) YPGMTPRPGsSYGPGYPN 2124- 2140 (22.65/ 6.15) HPAPPSTQS.ENSEGNAA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 53.52| 16| 17| 1500| 1515| 2 --------------------------------------------------------------------------- 1420- 1438 (20.57/ 6.46) PGmgPmGMQRQFSNPQMYQ 1500- 1515 (32.95/16.07) PS..S.GPQNPYGAQMIPQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 85.25| 17| 17| 1540| 1556| 3 --------------------------------------------------------------------------- 1540- 1556 (34.39/19.52) QQQQMMQ..QQQQQQ.QHQQ 1559- 1576 (26.59/13.38) QHQLQLQ..RSQAHQiQHQP 1577- 1595 (24.27/11.55) NQQTIQQtpEQLQIQ.QSQQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 59.91| 16| 17| 743| 759| 4 --------------------------------------------------------------------------- 743- 758 (30.39/19.70) DKDKDKEKDKEKDKEK 761- 776 (29.51/13.73) EKDKEKDKEKEKDKEK --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 81.55| 16| 18| 1449| 1464| 7 --------------------------------------------------------------------------- 1403- 1417 (18.77/ 7.75) .QM..GQMGgmNGMGGMP 1449- 1464 (31.78/20.27) RQMQAGQSG..YGAPGVP 1468- 1483 (31.01/19.54) QQSPGGPGG..FGVPSGP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 50.94| 13| 19| 1317| 1335| 8 --------------------------------------------------------------------------- 1318- 1331 (24.21/ 9.84) PPGATSPVpPPTPM 1338- 1350 (26.73/11.40) PLHHTSPF.SAGPM --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 77.36| 17| 19| 804| 820| 9 --------------------------------------------------------------------------- 804- 820 (30.32/14.04) NGNSFADPTEDLYNPAG 825- 841 (27.14/11.71) EGDEISNESPDEKTPEG 842- 855 (19.90/ 6.40) SPNGSPRPKEDI.EP.. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 146.87| 44| 46| 624| 669| 10 --------------------------------------------------------------------------- 624- 669 (76.36/56.58) YQFIRRK..WKWIRKKEIKFGGKAKKRFGIGSPQNFALNMMkfREKRK 671- 716 (70.51/45.49) YQPYHRKrpVKSVKEKKKKAKRKVKKFVKYANPNQFLASIS..RTKRK --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 97.65| 30| 33| 2340| 2372| 11 --------------------------------------------------------------------------- 2342- 2372 (50.29/33.53) P....WVDDELEEKKRKKQKENEQYPAeEPQAPSP 2374- 2407 (47.36/21.04) PagmiHIPETLSEQERKVQPTLADMFA.DPSTVAP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 69.73| 23| 27| 379| 405| 12 --------------------------------------------------------------------------- 379- 405 (31.99/26.41) QKIRWMfEPDLRQDKPKEEtaaEKEKR 409- 431 (37.75/18.59) REVRRL.RRQRREERRREQ...EKQRR --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 54.55| 15| 15| 582| 596| 13 --------------------------------------------------------------------------- 582- 596 (28.25/18.09) FLSWKSQRANHFDTT 599- 613 (26.31/16.30) FVNRLFENADTFDET --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 46.04| 14| 15| 470| 483| 15 --------------------------------------------------------------------------- 470- 483 (25.26/15.85) IDNVRLLYPS.KFVC 486- 500 (20.77/11.56) VEEDRQMLESmGFKC --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 77.91| 24| 27| 1929| 1954| 18 --------------------------------------------------------------------------- 1254- 1283 (33.51/15.18) PATnkfDIQCQVERvtvPMAYKSMVTRNFE 1931- 1954 (44.39/31.79) PPA...EIPFVIEG...PMTWKQVVTKAIR --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 96.58| 26| 27| 2160| 2185| 19 --------------------------------------------------------------------------- 2160- 2185 (47.11/25.55) FVEPENRNSEEAPTTTERPPNSFPYR 2189- 2214 (49.47/27.27) WHEKDDDTFEDPPEVHDILPEGFYER --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 73.17| 23| 32| 514| 544| 20 --------------------------------------------------------------------------- 514- 544 (35.32/38.15) PRNKNV..VNMSNpllstmavYQYVQNEKRAER 549- 573 (37.85/22.57) PRNKPVeiEPLSN........FEFLSNPEAARR --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 62.95| 17| 46| 2600| 2616| 22 --------------------------------------------------------------------------- 2600- 2616 (31.46/21.43) AFYQMTKRSKTALNNMD 2649- 2665 (31.49/21.46) AIYQMDEEGKPILNQLD --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 104.43| 25| 25| 1735| 1759| 23 --------------------------------------------------------------------------- 1690- 1712 (22.01/12.73) .....CSCSVS.IRSRdlgmYITPHAVLS 1735- 1759 (49.50/40.76) NSATSCTCGFSAIRHR....YLSCCAGLF 1761- 1781 (32.92/23.85) EDADEAT....ASEHA....NASVIPPLF --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 57.39| 16| 19| 940| 958| 25 --------------------------------------------------------------------------- 940- 958 (22.68/27.50) EAARRMkwlQLYRE...KAEKR 961- 977 (20.15/12.11) KTAR.....QCHRDylrQIAKR 981- 992 (14.55/ 6.21) KALRRL......RI...TAKK. --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 89.73| 24| 44| 219| 243| 27 --------------------------------------------------------------------------- 219- 243 (45.36/32.06) RWFTMPLVARDHYlHCMYPSHSPAI 263- 286 (44.37/26.63) RQPTLIKLARRHF.ECKTPKRFPVV --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 129.43| 27| 27| 1115| 1141| 28 --------------------------------------------------------------------------- 1106- 1132 (44.37/27.16) LANDPSSYLFNAGHIRTLGEHIGPDGM 1133- 1159 (43.47/26.42) LSPPASNEMPKGGPLSVGPASIESQGL 1163- 1187 (41.60/24.88) YPTPPSVQMLQADASQAHSPSIG..GK --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 47.61| 14| 27| 2051| 2064| 29 --------------------------------------------------------------------------- 2051- 2064 (23.89/18.32) TASRYREVLKDYQS 2079- 2092 (23.72/18.12) TNNHLRAVPKELAS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 54.12| 16| 33| 1611| 1629| 31 --------------------------------------------------------------------------- 1611- 1629 (21.31/22.76) YQRRQIqLMNGlmPTSLQP 1645- 1660 (32.80/19.82) YKRQDI.IYNP..PNPAHP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 62.83| 19| 23| 1785| 1803| 32 --------------------------------------------------------------------------- 1785- 1803 (35.48/22.61) TIKTRDMMWFDP..QSVHDLA 1805- 1825 (27.35/15.54) TYQIRQMAFSNSlgKAVSQMA --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) ADKDKD 2) RKFNAW | 740 715 | 745 720 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab