Description | Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MIFIKVQLFISVYHFLSVSKLSITSSKDNSAKVSSQQSQPFYSEASKTPSGSGPVRDSTEDMASSKEGEKDASRKVKVPKRPEVNNGGSLEDCISNVFSLLELPGIKWKCFRPKLNAPRGVVPLTSDLVLKAYSRCLTDGILCTWRRKPSPPTGNNELLPPTHYFSNDSPKELWVFWYDAEPTALAKYCEGLDSDEELSSANQMNIVSYEVRTILFKALHVVLERDLTKDGFVRFGRWFTMPLVARDHYLHCMYPSHSPAIRFNFFVHGTSTICASIQAQRQPTLIKLARRHFECKTPKRFPVVVGPWSMRGYLIADQMTLLADPKIQEAAEKEWNQWKEYLQLEEKEPENVAEERQKTPEAEPSAPPQTTRVLLASSSDEDQEKSGGEEKNEEVSQKIRWMFEPDLRQDKPKEETAAEKEKRMAAREVRRLRRQRREERRREQEKQRRADDNQEDYDSDVVTDQEEDEAGKEEIVNNDVPKMILIEIDNVRLLYPSKFVCITVEEDRQMLESMGFKCHPMPQELQVPGRRPRNKNVVNMSNPLLSTMAVYQYVQNEKRAEREHFYPRNKPVEIEPLSNFEFLSNPEAARRVKPPKSPTFLSWKSQRANHFDTTDIFVNRLFENADTFDETPRPIKFACLSYQFIRRKWKWIRKKEIKFGGKAKKRFGIGSPQNFALNMMKFREKRKEYQPYHRKRPVKSVKEKKKKAKRKVKKFVKYANPNQFLASISRTKRKFNAWKQKMNGPPPKKGPAKKEAAADKDKDKDKEKDKEKDKEKDKEKDKEKDKEKEKDKEKDKENEDDPFVMDKVSQLDWANFSEDETNGNSFADPTEDLYNPAGGELEEGDEISNESPDEKTPEGSPNGSPRPKEDIEPFVPITHPAAKPSNIEWDLGREVDDMTEELEYVPKEDHITQDPKKVKNGHIPISEFAKDNQFYHGEICRLGLRGYKKICAERDREEAARRMKWLQLYREKAEKRNIKTARQCHRDYLRQIAKRCLRKALRRLRITAKKDALAPPPPKPKPVDPVLKKKEDAKKFEMSMKMMERDLGNLDMSAFCQIREKAGPHGVQSTAGYMKPNYTNSPHGSFDHDSESEIDEQRTGLGEGTSDQYQDGESVDMIDIERELANDPSSYLFNAGHIRTLGEHIGPDGMLSPPASNEMPKGGPLSVGPASIESQGLNQIYPTPPSVQMLQADASQAHSPSIGGKFRSTANDDIERAVAPGKTIVDVEIEDIETRNMQRWSKIANQSKLSKFLVASRDNPILKGRKKKYDTPATNKFDIQCQVERVTVPMAYKSMVTRNFECAPPHTFAELIRQSRTGIKKYTRPLQIQSTLARPPPGATSPVPPPTPMFNPHTLPLHHTSPFSAGPMSHHSMGPPAYPPTPGPYPPTTPTYPGMTPRPGSSYGPGYPNHHQMMPPGYPNQMGQMGGMNGMGGMPGMPGMGPMGMQRQFSNPQMYQHHQMMRMQQMRQMQAGQSGYGAPGVPQYPQQSPGGPGGFGVPSGPSSVQRLNNFVNQSQFGPSSGPQNPYGAQMIPQSPSFNQPYPGMGNQMMSPMQQHQFQQQQMMQQQQQQQQHQQQQQHQLQLQRSQAHQIQHQPNQQTIQQTPEQLQIQQSQQVQAVFQQLPDREKRKYQRRQIQLMNGLMPTSLQPASIKALKNPPDANIPYKRQDIIYNPPNPAHPRGDSLTIAIVLSDTLLDLHFDSVFDACPICSCSVSIRSRDLGMYITPHAVLSSREIGETNKREYTTGTWSGFHVNSATSCTCGFSAIRHRYLSCCAGLFDEDADEATASEHANASVIPPLFSRNTIKTRDMMWFDPQSVHDLALTYQIRQMAFSNSLGKAVSQMATEKEHRRNITNAVDIGTDITVPTEYVLSHVDTLELMMLGMSALGPMQTPETTGSQLPPQSKYLSYFHPWGFQTANEIAELESSEWVDLLDIVTPTLESSMKQARRPPAEIPFVIEGPMTWKQVVTKAIRGKPPTDEDEDFSLAEPVPAVMRALEQEAVRAAPNIEQYYDQAELGPVDQPKDVMYITIIPDNDDIYERTVKFMDTMTETYERMRLGRHIPFPVSTGTASRYREVLKDYQSRYPYQEQHQQCVDATNNHLRAVPKELASNPNPLNTDPEEWNKRLKRKLELSEELKKADEHPAPPSTQSENSEGNAAAPAATPAAETLSSIFAEDAFVEPENRNSEEAPTTTERPPNSFPYRVTNWHEKDDDTFEDPPEVHDILPEGFYEREGILRIGKPLEPSRISHTVVSTREFDNMTQHLSDAQGFVSKLRLFLQQMEDLVFHTLIESNEAFERKGYRYQMAVEGRLKRQKHRRDIEEERLRYEAAKVQDEADKREKIDEADLLLGAEVGEETPSPWVDDELEEKKRKKQKENEQYPAEEPQAPSPVPAGMIHIPETLSEQERKVQPTLADMFADPSTVAPINAQNIPWKQRDTRVANPFPYSNQPPVAFEAAGSNDTDAYSTLPHVIVLYVVNPFSYGAEGQSALHMRIALLSFIRAYNSIVGRLPFTKRTQLQLEIIGMESLDDMVKGIPDYLNDSQVPFDILHDYPVRNERPSESGQEAAARSLSVAVYTHPRVFTPEVYKAVSARCMTAFGPGSQLINTINNIEKMNQDAFYQMTKRSKTALNNMDGYMGMMGSHQVETKGHISYRIPSNIVCLAPPPAIYQMDEEGKPILNQLDEQTLFISYCLVGTEYLVATATDSQGKLIDNCIANMKPRRLHNQVYRYKNKTQILDGMGKLWSFILGVMSSDIKNWRLVVGRLGRIGHGEFRAWTHLLNKTSLLRYSSSLKDICGACRSMPSAIGTPAILSACLITLEPEPSIRIMPEFHDIDESIKKNLIFQTPGDLSCTHILTFPVGTEINLEVQDQAADTKGDENWEFGDLDIMEGLDDGDTEIMKDLGLETPSSAAIRQTGGVSMFFSEDSSSIEIQNQPLASGYYISTAPAPELPSWFWATCPSAKRHSPVHLKSSLHINISEVKNDDIAMESAKDKEKEKEEKDIHPLESRQTEEVLRHVLESYNALSWLNLNRQTGDRYSCLPIHVQHLLRLYHSVARLLV |
Length | 3060 |
Position | Middle |
Organism | Caenorhabditis nigoni |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis. |
Aromaticity | 0.08 |
Grand average of hydropathy | -0.766 |
Instability index | 57.38 |
Isoelectric point | 6.31 |
Molecular weight | 347463.73 |
Publications |
Annotated function |
Component of the Mediator complex, a coactivator involved in
regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364134 |
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro |
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro |
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro |
Binary Interactions |
Repeats | >MDP16224 --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 86.62| 17| 17| 1376| 1392| 1 --------------------------------------------------------------------------- 1375- 1391 (35.59/14.95) PPAYPPTPG.PYPPTTPT 1392- 1409 (28.39/10.09) YPGMTPRPGsSYGPGYPN 2142- 2158 (22.65/ 6.21) HPAPPSTQS.ENSEGNAA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 53.52| 16| 17| 1518| 1533| 2 --------------------------------------------------------------------------- 1438- 1456 (20.57/ 6.16) PGmgPmGMQRQFSNPQMYQ 1518- 1533 (32.95/15.29) PS..S.GPQNPYGAQMIPQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 85.25| 17| 17| 1558| 1574| 3 --------------------------------------------------------------------------- 1558- 1574 (34.39/20.15) QQQQMMQ..QQQQQQ.QHQQ 1577- 1594 (26.59/13.77) QHQLQLQ..RSQAHQiQHQP 1595- 1613 (24.27/11.86) NQQTIQQtpEQLQIQ.QSQQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 59.91| 16| 17| 761| 777| 4 --------------------------------------------------------------------------- 761- 776 (30.39/18.39) DKDKDKEKDKEKDKEK 779- 794 (29.51/12.83) EKDKEKDKEKEKDKEK --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 62.79| 16| 18| 1467| 1482| 7 --------------------------------------------------------------------------- 1467- 1482 (31.78/15.49) RQMQAGQSGYGAPGVP 1486- 1501 (31.01/14.93) QQSPGGPGGFGVPSGP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 50.94| 13| 19| 1335| 1353| 8 --------------------------------------------------------------------------- 1336- 1349 (24.21/11.23) PPGATSPVpPPTPM 1356- 1368 (26.73/13.00) PLHHTSPF.SAGPM --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 57.46| 17| 19| 822| 838| 9 --------------------------------------------------------------------------- 822- 838 (30.32/12.96) NGNSFADPTEDLYNPAG 843- 859 (27.14/10.80) EGDEISNESPDEKTPEG --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 97.65| 30| 33| 2358| 2390| 10 --------------------------------------------------------------------------- 2360- 2390 (50.29/32.45) P....WVDDELEEKKRKKQKENEQYPAeEPQAPSP 2392- 2425 (47.36/20.43) PagmiHIPETLSEQERKVQPTLADMFA.DPSTVAP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 146.87| 44| 46| 642| 687| 11 --------------------------------------------------------------------------- 642- 687 (76.36/51.87) YQFIRRK..WKWIRKKEIKFGGKAKKRFGIGSPQNFALNMMkfREKRK 689- 734 (70.51/41.67) YQPYHRKrpVKSVKEKKKKAKRKVKKFVKYANPNQFLASIS..RTKRK --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 51.23| 12| 44| 1410| 1425| 12 --------------------------------------------------------------------------- 1410- 1421 (27.40/11.58) HHQMMPPGYPNQ 1545- 1556 (23.83/12.86) GNQMMSPMQQHQ --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 54.55| 15| 15| 600| 614| 14 --------------------------------------------------------------------------- 600- 614 (28.25/20.42) FLSWKSQRANHFDTT 617- 631 (26.31/18.40) FVNRLFENADTFDET --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 89.87| 24| 44| 237| 261| 15 --------------------------------------------------------------------------- 237- 261 (45.21/32.17) RWFTMPLVARDHYlHCMYPSHSPAI 281- 304 (44.66/27.02) RQPTLIKLARRHF.ECKTPKRFPVV --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 101.74| 24| 44| 940| 963| 16 --------------------------------------------------------------------------- 939- 962 (42.18/29.64) ICRLGLRGYKKICAERDREEAARR 963- 982 (28.77/17.46) MKWLQL..YRE.KAEKRNIKTAR. 984- 1003 (30.79/19.29) .CH...RDYLRQIAKRCLRKALRR --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 69.73| 23| 27| 397| 423| 17 --------------------------------------------------------------------------- 397- 423 (31.99/26.31) QKIRWMfEPDLRQDKPKEEtaaEKEKR 427- 449 (37.75/18.53) REVRRL.RRQRREERRREQ...EKQRR --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 61.97| 19| 19| 1074| 1092| 18 --------------------------------------------------------------------------- 1074- 1092 (36.50/18.82) MKPNYTNSPHGSFD..HDSES 1094- 1114 (25.47/10.79) IDEQRTGLGEGTSDqyQDGES --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 77.91| 24| 27| 1947| 1972| 20 --------------------------------------------------------------------------- 1272- 1301 (33.51/ 9.96) PATnkfDIQCQVERvtvPMAYKSMVTRNFE 1949- 1972 (44.39/20.91) PPA...EIPFVIEG...PMTWKQVVTKAIR --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 96.58| 26| 27| 2178| 2203| 21 --------------------------------------------------------------------------- 2178- 2203 (47.11/21.18) FVEPENRNSEEAPTTTERPPNSFPYR 2207- 2232 (49.47/22.60) WHEKDDDTFEDPPEVHDILPEGFYER --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 104.43| 25| 25| 1753| 1777| 22 --------------------------------------------------------------------------- 1708- 1730 (22.01/11.93) .....CSCSVS.IRSRdlgmYITPHAVLS 1753- 1777 (49.50/39.07) NSATSCTCGFSAIRHR....YLSCCAGLF 1779- 1799 (32.92/22.70) EDADEAT....ASEHA....NASVIPPLF --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 44.22| 16| 17| 1200| 1215| 25 --------------------------------------------------------------------------- 1200- 1215 (27.86/20.06) PSIG.GK.FRSTANDDIE 1216- 1233 (16.36/ 8.25) RAVApGKtIVDVEIEDIE --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 47.61| 14| 25| 2069| 2082| 26 --------------------------------------------------------------------------- 2069- 2082 (23.89/14.76) TASRYREVLKDYQS 2097- 2110 (23.72/14.60) TNNHLRAVPKELAS --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 3| 90.47| 22| 25| 1124| 1147| 28 --------------------------------------------------------------------------- 1124- 1147 (34.48/27.68) LANDPSSYLFNAghIRTLG.EHIGP 1150- 1164 (29.41/15.55) MLSPPASNEMPK......G....GP 1165- 1182 (26.57/13.18) LSVGPAS.......IESQGlNQIYP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 64.10| 19| 26| 551| 571| 29 --------------------------------------------------------------------------- 551- 571 (30.36/23.12) YQYVQNEKRAERehFYPRNKP 580- 598 (33.74/18.63) FEFLSNPEAARR..VKPPKSP --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 62.83| 19| 23| 1803| 1821| 30 --------------------------------------------------------------------------- 1803- 1821 (35.48/20.56) TIKTRDMMWFDP..QSVHDLA 1823- 1843 (27.35/14.14) TYQIRQMAFSNSlgKAVSQMA --------------------------------------------------------------------------- --------------------------------------------------------------------------- No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level 2| 62.67| 20| 23| 2504| 2523| 31 --------------------------------------------------------------------------- 2504- 2523 (32.28/19.37) NSIVGRLP.FTKRTQLQLEII 2529- 2549 (30.39/17.75) DDMVKGIPdYLNDSQVPFDIL --------------------------------------------------------------------------- |
MoRF Sequence | Start | Stop |
1) AADKDKDKDKEK 2) RKFNAWK | 757 733 | 768 739 |
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Designed by Dr. Shailesh Lab & Dr. Jitendra K. Thakur Lab