<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16214
Description |
Mediator of RNA polymerase II transcription subunit 15 |
Sequence | MSEEDWPSPKFREHVIQRLEPELARNRQNAPNLPVPGDARQVEEYVFAKCMSKDEYMRTIAKVINAINCNSKSAAVPSVLQPSQFHSPPCTTAVLGTGVGTPGYRATVPPDPQPTSAQTRNPPVTTATTQASTTPSAPAVTGTVSASAAVAAAVASFPSPDSAALRAAPGGQTTPGAQPSSGAPGSTTPNAPFPNGTQPGAPPMNGGAGGPPMGQPPPQMGAPNMGMNGPGGYGGYGMMNGPPGAGGPMGGNPYGQPMKKEMDQSRGPWDPQGHMYQQQQPWGGMPPQQGHGGYPNRPMNGQQTTPTGTSSSVLESLINQPQQYPGHHNQMAPPGGDRNAAAGRGGVPGNPGGVPGAPQRPGAMPVNQGVMSIEDQNVYQMKLRNMRGSCDSLRTRARQCRQEGNHEAAHKLEVMLSVLEGRRVVSLEYLNHLETWIARKQDFLNINPMGAGNPAHMGMNDPVMNGDHGMMGNGQVHNPYGHPGYNHGQYGMGGPPPPHHMQMHQQQMWQQQQQQRMMPHDSMMMGGGGPMHGGPMYRGDMGHEMNSPVNSHRHNPYPSPAAMRNNMRGMQNGPGPIGRDRNSMSGSMSGPSSGAPSMNPMGTPKMGGPGSIGGLSNLDDFTYDDFLPNPIDALQPTLHVGPGSSMGGGPRVNLNDAARKELQAMEGRFDIEPNHQRHDANHIIVSAKMRNQPVPPLRLVVPITYPSGNVTVDRAAIDLDAYLYDDLQNVVHERLSRPGLSSLTDYLNAWEEQVNQYMQQNQTNGGIDAAFGVGNDFFYDNLNL |
Length | 784 |
Position | Tail |
Organism | Caenorhabditis nigoni |
Kingdom | Metazoa |
Lineage | Eukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida>
Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae>
Caenorhabditis.
|
Aromaticity | 0.05 |
Grand average of hydropathy | -0.734 |
Instability index | 52.70 |
Isoelectric point | 6.62 |
Molecular weight | 83433.42 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364148
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
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GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP16214
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 155.05| 32| 33| 599| 631| 1
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441- 467 (37.51/ 6.21) QDFL.N...INPM...GAG.NPAH..MG.MndPVMNG..D
468- 501 (43.85/ 8.42) HGMMGNGqvHNPYGHPGYNhGQYG..MGGP..PPPHHM..
502- 532 (39.86/ 7.09) QMHQQQM..WQQQQQQRMM.PHDSmmMGGG..GPM....H
599- 623 (33.83/ 7.10) ..........NPMGTPKMG.GPGS..IGGL..SNLDDFtY
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
6| 265.42| 35| 35| 196| 230| 2
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169- 202 (44.03/ 9.92) P..GGQTTP....G...........AQPSS.GAP..GSTTPnapfpnGTQPGAP
203- 231 (60.91/17.02) PMNGGAGGP..PMG...........QPPPQMGAPNMGMNGP......G......
232- 260 (35.29/ 6.25) ....GYGGY..GMM...........NGPPGAGGP.MGGN.P.....yG.QPMKK
261- 295 (46.75/11.06) EMDQ.SRGPwdPQG...........HMYQQ.QQPWGGMPPQ......QGHGGYP
298- 341 (39.54/ 8.04) PMN.GQQTT..PTGtsssvleslinQPQQYPGHHN.QMAPP.....gGDR.NAA
342- 364 (38.90/ 7.77) AGRGGVPGN..PGG...........VP....GAP....QRP......G....AM
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 88.05| 18| 71| 71| 88| 3
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71- 88 (33.22/18.17) SKSAAVPSVLQP..SQFHSP
103- 122 (29.24/14.98) GYRATVPPDPQPtsAQTRNP
145- 160 (25.58/12.05) SASAAVAAAV....ASFPSP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 55.74| 14| 123| 548| 565| 4
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545- 558 (27.95/14.29) MNSPVNSHRHNPYP
563- 576 (27.80/ 6.17) MRNNMRGMQNGPGP
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