<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16192

Description Uncharacterized protein
SequenceMSEFSQTALFPSLPRTARGTAVVLGNTPAGEKVLYCNGTSVYTCPVNNLTNTEIYTEHSHQTTVAKYSPSGYYCASGDIHGNVRIWDTTQTTHILKTTIPVFSGPVKDIAWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIVSGSDDNTVAIFEGPPFKFKSTFGDHTKFVHSVRFNPDGSLFASTGGDGTIILYNGADGTKVGVFEDDSLKGVAHSGSVYGLTWSPCGSKLATASADKTVKIWNVSTLKVEKTVTIGSKIEDQQLGIIWTKQALVSISATGFVNLINPELGSVDEVRYGHNKAITALATSSDGKTLYSADAEGHITAWETATGKSNRIIPEIHATMITGIKSTSNGNLFTVSWDDHLKVVPAGGSGVDSSKVVSNKLSSQPLGLAVSADGDVAVAACYKHVAIYAQGKLTEVPIGYNSSCVALSSDKQLVAVGGQDSKVHVYKLSGPSLSEVKTISHAAEITSVAFSNNGAILVATDQSRKVIPYIVAKNFELAHTHSWTFHTAKVACVSWSPDNNRLATGSLDNSVIIWNMSKPSDHPIIIKGAHAMSSVNSVLWLNATTIVSAGQDSNIKFWNVPL
Length611
PositionTail
OrganismCaenorhabditis nigoni
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Nematoda> Chromadorea> Rhabditida> Rhabditina> Rhabditomorpha> Rhabditoidea> Rhabditidae> Peloderinae> Caenorhabditis.
Aromaticity0.08
Grand average of hydropathy-0.092
Instability index25.69
Isoelectric point7.32
Molecular weight65067.39
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16192
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     295.93|      42|      42|     431|     472|       1
---------------------------------------------------------------------------
  128-  172 (47.78/25.99)	FGHVFLFdtgtSNG...........NLTGQ.ARAM.......N.............SVDFKP.......SRPfRIVSGSDDNTV
  174-  214 (34.56/16.71)	.....IF....E.G...........PPFK.....F.......KstfgdhtkfV..HSVRFNP.......DGS.LFASTGGDGTI
  216-  263 (37.66/18.89)	.....LY....NGAdgtkvgvfeddSLKGV.AHSG.......S.........V..YGLTWSP.......CGS.KLATASADKTV
  431-  472 (62.76/36.50)	YKHVAIY....AQG...........KLTEV.PIGY.......N.........S..SCVALSS.......DKQ.LVAVGGQDSKV
  475-  515 (34.69/16.81)	YKL.........SG..........pSLSEVkTISH.......A.........AeiTSVAFSN.......NGA.ILVATDQSRKV
  518-  560 (40.71/21.03)	......Y....IVA...........KNFEL.AHTHswtfhtaK.........V..ACVSWSP.......DNN.RLATGSLDNSV
  562-  604 (37.77/18.97)	.....IW....NMS...........KPSDH.PIII.......K.........G..AH.AMSSvnsvlwlNAT.TIVSAGQDSNI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     163.47|      40|      41|     297|     336|       2
---------------------------------------------------------------------------
  297-  336 (67.90/54.21)	LVSISATGFV..........NLINPELGS.VDEVRYGHNKAIT...ALATSSDG
  339-  379 (43.16/31.20)	LYSADAEGHItawetatgksNRIIPEI..........HATMIT...GIKSTSNG
  381-  423 (52.40/39.79)	LFTVSWDDHL..........KVV.PAGGSgVDSSKVVSNKLSSqplGLAVSADG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.91|      19|     178|      84|     111|       3
---------------------------------------------------------------------------
   56-   79 (28.23/21.26)	TEHSHQTTVAKYSPSgyycaSGDI
   91-  109 (33.68/17.46)	TTHILKTTIPVFSGP.....VKDI
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16192 with Med16 domain of Kingdom Metazoa
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