<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16181

Description Mediator of RNA polymerase II transcription subunit 19
SequenceMSAHDGERSPKRQRLDSYSPASPRPTAEPTKTFVPNYSTPPPSVRMSPSWTAQSQTSQQLQHQPGGSNFPSPPSTAGFQNRMANRDSEHGGSGHHTPASQDDGDIRKDGDGDSEMTDRRENPGDGHRRSDHERQRGEGHDAATSSSNAVPQLYRIRTSPIVPSRPHASQNLLALYDLSAIQKRVARVDDAGNKIKLRKSYASKVKNLGLEGLNKAAPNQGELRGLVDPDWNFETAPGQTLWDQTWQELKLGDSAAENELLGKLDSALQFQPGRLPRNEHEAWKKTLGLDESTLAAKSLAASKDAKRPVPNAHLAKTAPATAMRSSAPSSPRNGQRLDRAGKKRSYGDSSFEGYGEGYEDDTDLDDNGRRRDSSKRQKRKEFPSNANSPAFSSGGGSSMVGVRSS
Length404
PositionHead
OrganismCercospora beticola (Sugarbeet leaf spot fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Dothideomycetidae> Mycosphaerellales> Mycosphaerellaceae> Cercospora.
Aromaticity0.05
Grand average of hydropathy-1.136
Instability index65.03
Isoelectric point9.37
Molecular weight43984.51
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU364151

GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16181
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     263.07|      92|     146|     109|     211|       1
---------------------------------------------------------------------------
  109-  170 (83.18/42.12)	............................................................................................GDGDSEMTDRRENPGDGHRRSDHER.Q.RGEGHDAATS...SSNAVPQLYRIRTSPiVPSrPHASQN
  171-  206 (17.89/58.10)	LLALYDLSAIQKRVA.RVDDAGNKiklrKSYA.SKVKN.........................................................................................................................
  261-  316 (61.38/46.35)	......................................lgleglnkaapnqgelrglvdpdwnfetapgqtlwdqtwqelklgdsaaenellGKLDSAL...QFQPGR.LPRNEHEAwK.KTLGLDESTL...AAKSLAASKDAK.RP.VPN.AHLAKT
  319-  404 (100.61/ 4.77)	ATAMRSSAPSSPRNGqRLDRAGKK....RSYGdSSFEG.....................................................yGEGYEDDTDLDDN...GRRRDSSKR.QkRKEFPSNANSpafSSGGGSSMVGVRSS............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.65|      14|      16|      10|      25|       2
---------------------------------------------------------------------------
   10-   25 (22.11/18.06)	PKRQRLDSYSpaSPRP
   29-   42 (28.54/16.00)	PTKTFVPNYS..TPPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.14|      15|      15|      63|      77|       3
---------------------------------------------------------------------------
   63-   77 (28.77/15.65)	QPGGSNFPSPPSTAG
   79-   93 (27.37/14.51)	QNRMANRDSEHGGSG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16181 with Med19 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LAAKSLAASKDAKRPVPNAHLAKTAPATAMRSSAPSSPRNGQRLDRAGKKRSYGDSSFEGYGEGYEDDTDLDDNGRRRDSSKRQKRKEFPSNANSPAFSSGGGSSMVGVRSS
2) MSAHDGERSPKRQRLDSYSPASPRPTAEPTKTFVPNYSTPPPSVRMSPSWTAQSQTSQQLQHQPGGSNFPSPPSTAGFQNRMANRDSEHGGSGHHTPASQDDGDIRKDGDGDSEMTDRRENPGDGHRRSDHERQRGEGHDAATSSSNAVPQLYRIRTSPIVPSRPHAS
293
1
404
168










Molecular Recognition Features






MoRF SequenceStartStop




1) KRKEF
2) LDSYSPA
3) QLYRIRTSPIV
4) TAEPTKTFVPNY
377
15
151
26
381
21
161
37