<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16171

Description Mediator of RNA polymerase II transcription subunit 14
SequenceMPGRLMMNQQGAVGSQDLKKDRSQAQTGNVSQKRDLAQMQGAAHTNGNTNGVSSGSLPNGLPAKNEPLPTSNGHSNGAGTSVSRPSTPPPLDQSWRTSENNKPFGVLLARLAQQCFGDLNATLNKMNDMPPPQPAASNGVVPQTFDPSKESLARKKALMDFASDQRDRFTKALILSDFARSEHDMAKLVDLKAWFDSQIAAQENAMRFIGITKHDVARAKMPNPNIEGAMELLANGKAPSKWPDLGYIPPPKLTAKQLASTLQDMNVIIATRLNLHEDLPHYFRDFSIANGRATFRVPGEFEVDLSVADEDPSSQFYLIDLRFSFTPAPGLTDDVLRNALEAHTNEALSSKGLLGCYDFLHNFVLTHKINVLKSQSVQLFREKWFDCLVTETQRRVLAIQYWKDQAGKKSWIEFGISTGKSRGKHSRRKPTSQHSVRWFRQGQEVHDQAILVDWDDLDLDAILSQVTAKHASWSLSTISDRLQALAGPRSQVRAQLSTSNSSADECNLTLSLPGLRNPIAVNIEPVTGLVTISLSSRDAATAQRNLNRDPSTDNSASIAQLLCRAVQDKVRRVAISARWQLVDPRSFGPQPNFRALFGPDIVRHDIFACNEAWGERWSLCTTYSLAGQRWWVVQTNSRPVEEGRTIKSIVDARPLDVTTSAISRADLSRIQTMGEAEVSFAVLVQELGANKIPYHLERLSSLTFDGDRRDESATTVVYIRMSQQDLKKPELAHYKPLAITEWIRIVYEGLLDDNDGSEESRHDIRLTLESSQLKHLKDYLTTTQSRNGDVAMNASGGLALSLRAQFGQSYIKEIARLLKRCRDLDSALSAARHLQYTCTAVGLSKLAFNYGTSQQYNGVLTKKGGSTKLKLGPTSSNPHQRIRTHLEEVYNRAADNPFFSLAFAMSAAQPFLEAISELELKHSAQRTLTLHSHHVFSYSLVYHAPLAPCRFKMVLHWNNQQTTRNKTVSYTVTVWDRDGIKLPADFTTALTDLSKDAGSTAEGWMGNNRGGFTSNAKGLRAMLQRLDDFMLSSTNGPDNAVEKLDKSETSLPETKPALNRNPSTTQAPTQQKPPTPAQMRNQARPPPTQMRLGQDSTARQMTVPATHGQRPNQNQGRVKKEIIELD
Length1126
PositionTail
OrganismCercospora beticola (Sugarbeet leaf spot fungus)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Ascomycota> Pezizomycotina> Dothideomycetes> Dothideomycetidae> Mycosphaerellales> Mycosphaerellaceae> Cercospora.
Aromaticity0.07
Grand average of hydropathy-0.517
Instability index41.17
Isoelectric point9.18
Molecular weight124911.43
Publications









Function






Annotated function

Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors. 


ECO:0000256	RuleBase:RU365082

GO - Cellular Component
mediator complex	GO:0016592	IEA:UniProtKB-UniRule

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:UniProtKB-UniRule

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16171
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|    1258.20|     420|     450|      21|     470|       1
---------------------------------------------------------------------------
   21-  296 (347.92/268.59)	.................................................................................................................................................................................................................................DRSQAQTGNVSQKRDLAQMQGAAHTNGNTN.GVSSGSLPNGLPAKNEP...LPTSN................GHSNGAGTSVSRPSTPPPLDQSWRTSENNKPFGVLLARLAQQCFGDLnATLNK...MNDMP....P....PQPA..ASNG..VV...PQTFDPSKESLARKKALMDFASDQRDRFTKALILSDFARSEHDMAKLVDLKAwFDSQIAAqenamrfigITKHDVARAK.MPNPNIEGAM...ELLANgKAPSKWPDLGYIPPPKLTAKQLASTlqdMNVIIATRLNLHE.DLPHYfRDFSIANG.RATFR
  297-  748 (595.43/444.82)	VPGEFEV..DLSVADEdpSSQfyLIDLRFSFTPAPGLTDDVlrnALEAHTNEALSSKGLLGcYDFLHNFV.LTHKINVLKSqSVQLFREKWFDCLVTETQRRVL....AIQY..WKDQAGKKSWIEFGIStgkSRGKHSRRKpTSQHSVRWFRQGQEVHDQAILVDWDDLDLDAIlSQVTAKH.................................aswslstisDRLQALAGPRSQVR..AQLSTSNSSADECNlTLSLPGLRNPIAVNIEPvtgLVTIS................LSSRDAATA.QRNLNRDP......STDNSASIAQLLCRAVQDKVRRV.AISAR...WQLVD....PrsfgPQPNfrALFGpdIV...RHDIFACNEAWGERWSLCTTYSLAGQRWWVVQTNSRPVEEGRTIKSIVDARP.LDVTTSA.........ISRADLSRIQtMGEAEVSFAVlvqELGAN.KIPYHLERLSSLTFDGDRRDESATT...VVYIRMSQQDLKKpELAHY.KPLAITEWiRIVYE
  754- 1100 (314.85/202.29)	NDGSEESrhDIRLTLE..SSQ..LKHLKDYLTTTQSRNGDV...AMNASGGLALSLRAQFG.QSYIKEIArLLKRCRDLDS.ALSAARHLQYTCTAVGLSKLAFnygtSQQYngVLTKKGGSTKLKLGPT...SSNPHQRIR.THLEEVYNRAADNPFFSLAFAMSAAQPFLEAI.SELELKHsaqrtltlhshhvfsyslvyhaplapcrfkmvlhwnnqqttrNKTVSYTVTV.WDRDGIKLP.ADFTTALTDlSKDAGSTAEGWMGNNRG...GFTSNakglramlqrlddfmlSSTNGPDNAVEK......LDKSETSLPETKP..................ALNRnpsTTQAPtqqkP....PTPA..QMRN..QArppPTQMRLGQDSTARQ...................................................................................................................................................
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16171 with Med14 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LNATLNKMNDMPPPQPAASNGVVPQTFDPSK
2) LQRLDDFMLSSTNGPDNAVEKLDKSETSLPETKPALNRNPSTTQAPTQQKPPTPAQMRNQARPPPTQMRLGQDSTARQMTVPATHGQRPNQNQGRVKKEIIELD
3) MPGRLMMNQQGAVGSQDLKKDRSQAQTGNVSQKRDLAQMQGAAHTNGNTNGVSSGSLPNGLPAKNEPLPTSNGHSNGAGTSVSRPSTPPPLDQSWRTSEN
119
1023
1
149
1126
100










Molecular Recognition Features






MoRF SequenceStartStop




NANANA