<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16162

Description Uncharacterized protein
SequenceMETSELTRFEDRVLETVKLCQDRKDSPLTWGMEVCKCLREVGLGIPSPELGQVLISNLCFINNNPYFWKFIEQAISSGLLSSLQVLALLSSRVIPHRRSQPEAYRLYLELVVRYAFSPTRMDDFCKKKITKSVDDALQLTKTYEVHIAESGHAFALFLFSIIVGLIDSTLEDWKLQLSSTDKLNGMFKDSDHQAMDVDSKVDHTDIRLELRERLHKTNSMRAIEVLGELTENKRAVVLLRLVLLNMPEKFNGLLQRLQFLEANRVASSNIKSASQVLARLFGNIQRIRGLENHLNKRHLINVLFNTGPCSSVSCSDFGTTQAACWLPFDIYMETAMDGRQLPATSAIDILAELIKTLQVNNRASWQHTFQALWISALRLVQRERDPLEGPIPHLDARLCILLSITPLAIVRLVDEEEMPSLSLEEGSNVRSHNEQGVAGCVQGTRRLGLITSLQALRQFSGLLSPPASVIIAANNAAAKAAAFVSNFKNGNEGLTEHVKNDLHTKSVGSMLHLIVEACITRKLIDTSTYFMPGYVSISVSSPPDSSLDQGAPWSAFMEGAHLAGSLKSSLIATPASSLVEIEKLYHIAINGSEEERSAAAKILCGASLIRGWNIQEHVVHFVVKLLSPPVPTNFTGPESHLVYYTPMLNTILFGMSSIDIVHVLSLHGVIPEVAASLMPLCEAFGSLVPTSSHKSSTSDEPSVYTVFSCAFLFLLRLWKFYRPPHEHCITEGGGYTGSELTLEYLLLLHNSRIASQNSSAAGDNVTNTLESSMSQAVYIDSFPKLRAWYCQNKACVASTLSGLSSGNPVHQLANKILNMIYRKMSKGGTMSSNFSAQSGSSISGSPVSTGEDAYERPMLPSWELLEAIPFVLEAVLTACAHGRLSSKDLTTGMRDLVDFLPASLAAILSYFSAEITRGIWKPVSMNGTDWPSPAATLLSVENEIKEILAAAGVTVCSPSAGVGPVMLPLPVAALVSLTITFKLDKGLEYIHGVAGPALENCASSCRWPSMPIIGALWAQKVRRWHDFIVLSCSRSAFKQNQEAVAQLLRSCFTSFLGSPNDINSSMSSPMGVNALLGTITISTRGLRPSIAPGLLFLRSCREIQNVQFVNNIIVELVVESARASAARWGNGNSARLKSNQTSLASAAALAKEVAMLGASLLCVAGGVQLVQGPLSGVWDRDPTRGLLLEELAF
Length1193
PositionTail
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.07
Grand average of hydropathy0.097
Instability index47.12
Isoelectric point6.58
Molecular weight130170.41
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16162
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     237.18|      78|     117|     418|     498|       1
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  418-  498 (123.25/76.85)	MPS.LSLEEGSNVRSHNEQGV..AGCVQGTRRLG.LITSLQAlRQFSGLLSPPASVIIAAN......NAAAKAAAFVSNFKNGNegLTEHV
  531-  618 (113.93/62.22)	MPGyVSISVSSPPDSSLDQGApwSAFMEGAHLAGsLKSSLIA.TPASSLVEIEKLYHIAINgseeerSAAAKILCGASLIRGWN..IQEHV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     182.71|      45|     294|     767|     817|       3
---------------------------------------------------------------------------
  767-  811 (74.88/40.54)	NTLESSMSQAVYIDSFPKLRAWYCQN.KACVA.......STLSGLSSGNPVH..Q
 1061- 1107 (50.28/25.96)	.DINSSMSSPMGVNALLGTITISTRGlRPSIA.......PGLLFLRSCREIQnvQ
 1134- 1185 (57.55/31.40)	ARLKSNQTSLASAAALAKEVAMLGAS.LLCVAggvqlvqGPLSGVWDRDPTR..G
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.29|      25|      75|     832|     857|      13
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  832-  857 (39.75/28.61)	SNFSAQSGSSISgSPVSTGEDAYERP
  909-  933 (49.55/31.10)	SYFSAEITRGIW.KPVSMNGTDWPSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      96.86|      34|     122|     222|     264|      16
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  222-  264 (49.82/50.62)	AIEVLGELTE....NKRAvvllrlvllNMPEKFNGL.LQRLQFLEANR
  346-  384 (47.04/30.65)	AIDILAELIKtlqvNNRA.........SWQHTFQALwISALRLVQRER
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16162 with Med33 domain of Kingdom Viridiplantae
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