<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16151

Description Uncharacterized protein
SequenceMSSNPQSSGTQVPRPPLVGSVGSQNFMQFQPGAAQQQQQQQTQSFIPAGSQQFRPVAQGQQMHFSQTMQQVPLRPPSSQAFSMSYGQPNMPVAAASTQPQHSTQGVGGFGMAPSSSYTFTPSPYGQPPNSINMSAQYQPSSQMNASVIPVGGQPWLSSGSQSIPVATHMEQPTGQQPSVMVSTISAAHAQTNPSIPSSSDWQEHTAADGRRYYYNKKTRQSSWEKPVELMTPLERADASTVWKEFATQDGRKYYYNKDTKESKWTIPEELKLAREQAEKMSSQGTHTDTAVASQAHVSVNVSTVEVSSNSASAMSGVISSPVSVTPVVPAANSLPLVALGSQSTPISTSSVSLNFVGGHSPVASITPSHASVTGTGIPADLATSATLMNVSDNVHSQDVPNSANGASIQDLEEAKKGMTVAGKVNVTIQEDKTVDDEPFPYPSKQEAKNAFKALLESANVESDWSWDQAMRIIVNDKRYGALKTLGEKKQAFNEYLGQRKKQEAEERRIKQKKAREEFTKMLEESKELTSSTRWSKAISMFEEDERFKAVERPRDREDLFESYIVELQKKEREKAQEEHQENLMEYRRFLESCGFIKVDSLWRKVQDRLEDDERCSRLEKIDRLEGFKEYIRDLEKEEDEQKKIHKEKVRRTERKNRDDFLKLMEEDVATGVLTAKTHWRDYCIKVKETPEYMAVALNTSGSTPKDLFEDVVEDLEKQYHDDKYRIKDSIKLKKITLTSTWTLEDLQDAISDEVSSPQISNINFKLVYDELLERIKEKEEKEAKKRQRLADDFTDLLYSIKEITASSIWEDSRQYFEDSQEYRYGLSIV
Length829
PositionUnknown
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.07
Grand average of hydropathy-0.786
Instability index51.81
Isoelectric point5.55
Molecular weight93314.88
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16151
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.44|      37|      38|     193|     229|       1
---------------------------------------------------------------------------
  193-  229 (73.24/47.52)	P..SIPSSSDWQEHTAADGRRYYYNKKTRQSSWEKPVEL
  232-  270 (67.20/42.98)	PleRADASTVWKEFATQDGRKYYYNKDTKESKWTIPEEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     143.21|      33|      37|      55|      88|       2
---------------------------------------------------------------------------
   33-   53 (25.64/ 7.79)	..AAQ..QQQQ.QQTQSFI...PAGSQQF.......
   55-   87 (66.08/32.38)	PVAQG..QQMHFSQTMQQVPLRPPSSQAFSMS.YGQ
   91-  126 (51.49/19.98)	PVAAAstQPQHSTQGVGGFGMAPSSSYTFTPSpYGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     102.41|      25|      25|     597|     621|       3
---------------------------------------------------------------------------
  534-  553 (25.01/12.78)	.......................WSKAISMFEEDERFKAV....ERP
  555-  572 (20.60/ 9.27)	DREDL..................FESYIVELQKKER...........
  597-  621 (36.69/22.08)	KVDSL..................WRKVQDRLEDDERCSRL....EKI
  656-  702 (20.11/ 8.88)	NRDDFlklmeedvatgvltakthWRDYCIKVKETPEYMAValntSGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.99|      10|      17|     325|     334|       4
---------------------------------------------------------------------------
  325-  334 (17.37/10.12)	TPVVPAANSL
  344-  353 (16.63/ 9.37)	TPISTSSVSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.40|      26|     134|     490|     515|       6
---------------------------------------------------------------------------
  489-  514 (40.90/24.06)	KQAFNEYLGQRKKQEAEERRIKQKKA
  515-  533 (20.12/ 8.33)	REEFTKMLEESKELTSSTR.......
  625-  649 (34.37/19.12)	.EGFKEYIRDLEKEEDEQKKIHKEKV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.11|      16|     178|     174|     189|       8
---------------------------------------------------------------------------
  151-  173 (24.06/15.99)	GGQPwlssgsqSIPVATHMEQPT
  174-  189 (28.05/19.98)	GQQP.......SVMVSTISAAHA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.31|      19|      40|     746|     770|      11
---------------------------------------------------------------------------
  759-  795 (20.04/17.05)	ISNINFKLVYDEllerikekeekeakkrqrLADDFTD
  800-  818 (31.27/ 9.42)	IKEITASSIWED..................SRQYFED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      26.78|      10|      28|     371|     381|      14
---------------------------------------------------------------------------
  371-  381 (11.64/ 9.28)	SVTGTGIpADL
  402-  411 (15.14/ 6.24)	SANGASI.QDL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16151 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LSSGSQSIPVATHMEQPTGQQPSVMVSTISAAHAQTNPSIPSSSDWQEHTAADGRRYYYNKK
2) MSSNPQSSGTQVPRPPLVGSVGSQNFMQFQPGAAQQQQQQQTQSFIPAGSQQFRPVAQGQQMHFSQTMQQVPLRPPSSQAFSMSYGQPNMPVAAASTQPQHSTQGVGGFGMAPSSSYTFTPSPYGQPPNSINMSAQYQPSSQMNASVIPVGGQP
3) TIPEELKLAREQAEKMSSQGTHTDTAVASQAHVS
156
1
265
217
154
298










Molecular Recognition Features






MoRF SequenceStartStop




1) GRKYYY
250
255