<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16149

Description Uncharacterized protein
SequenceMSSNPQSSGTQVPRPPLVGSVGSQNFMQFQPGAAQQQQQQQTQSFIPAGSQQFRPVAQGQQMHFSQTMQQVPLRPPSSQAFSMSYGQPNMPVAAASTQPQHSTQGVGGFGMAPSSSYTFTPSPYGQPPNSINMSAQYQPSSQMNASVIPVGGQPWLSSGSQSIPVATHMEQPTGQQPSVMVSTISAAHAQTNPSIPSSSDWQEHTAADGRRYYYNKKTRQSSWEKPVELMTPLERADASTVWKEFATQDGRKYYYNKDTKESKWTIPEELKLAREQAEKMSSQGTHTDTAVASQAHVSVNVSTVEVSSNSASAMSGVISSPVSVTPVVPAANSLPLVALGSQSTPISTSSVSLNFVGGHSPVASITPSHASVTGTGIPADLATSATLMNVSDNVHSQDVPNSANGASIQDLEEAKKGMTVAGKVNVTIQEDKTVDDEPFPYPSKQEAKNAFKALLESANVESDWSWDQAMRIIVNDKRYGALKTLGEKKQAFNEYLGQRKKQEAEERRIKQKKAREEFTKMLEESKELTSSTRWSKAISMFEEDERFKAVERPRDREDLFESYIVELQKKEREKAQEEHQENLMEYRRFLESCGFIKVDSLWRKVQDRLEDDERCSRLEKIDRLEGFKEYIRDLEKEEDEQKKIHKEKVRRTERKNRDDFLKLMEEDVATGVLTAKTHWRDYCIKVKETPEYMAVALNTSGSTPKDLFEDVVEDLEKQYHDDKYRIKDSIKLKKITLTSTWTLEDLQDAISDEVSSPQISNINFKLVYDELLERIKEKEEKEAKKRQRLADDFTDLLYSIKEITASSIWEDSRQYFEDSQEYRSIGEESLKREIFEEYISLLLEKAKEKELKREEEKVKKEKEKEEKEKKKEKEKEKERKEKEKEREREKGKERSKKDENEDDSVDVTDVKEEKRKEKDRDRKHRKRHQSAADDLSSEKDEKEDSKKSRRHSSDRRKSRKLQGGI
Length965
PositionUnknown
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.07
Grand average of hydropathy-1.036
Instability index53.84
Isoelectric point6.04
Molecular weight109974.16
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16149
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.44|      37|      38|     193|     229|       1
---------------------------------------------------------------------------
  193-  229 (73.24/45.37)	P..SIPSSSDWQEHTAADGRRYYYNKKTRQSSWEKPVEL
  232-  270 (67.20/41.00)	PleRADASTVWKEFATQDGRKYYYNKDTKESKWTIPEEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     195.37|      24|      25|     844|     867|       2
---------------------------------------------------------------------------
  523-  546 (25.95/ 8.16)	EESKELTSSTRWSKAI..SMFEED.ER
  547-  572 (22.89/ 6.42)	FKAVERPRDREDLFESyiVELQKK.ER
  844-  867 (35.68/13.68)	EKAKEKELKREEEKVK..KEKEKE.EK
  868-  888 (26.59/ 8.52)	EKKKEK....EKEKER..KEKEKErER
  889-  912 (25.95/ 8.16)	EKGKERSKKDENEDDS..VDVTDV.KE
  913-  936 (31.19/11.14)	EKRKEKDRDRKHRKRH..QSAADD.LS
  937-  960 (27.12/ 8.82)	SEKDEKEDSKKSRRHS..SDRRKS.RK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     253.45|      60|      65|      50|     114|       3
---------------------------------------------------------------------------
   11-   48 (46.46/28.89)	.....................QVP.RPPlvgsvGSQNF.MQ..F.QPG....AAQQQQQQQTQ.....SFIPA
   50-  114 (107.03/94.74)	SQQFRPVAQG.QQMHFSQTMQQVPLRPP.....SSQAFSMS..YGQPNmpvaAASTQPQHSTQGVGGfGMAPS
  116-  152 (63.78/42.67)	SYTFTPSPYG.Q..............PP.....NSINMSAQ..Y.QP.......SSQMNASVIPVGG......
  153-  192 (36.18/18.88)	.QPW..LSSGsQSIPVATHMEQPTGQQP.....SVMVSTISaaHAQTN.........................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     244.53|      59|      65|     690|     752|       4
---------------------------------------------------------------------------
  481-  515 (39.48/18.88)	......ALKTLG.EKKQAFNEYLGQR.KKQEAEER...R...........IKQKKAR................
  627-  666 (50.77/26.79)	..................FKEYIRDL.EKE.EDEQ..KKIHK...........EKVRRTERKNRDDFLKLMEE
  690-  752 (91.05/65.14)	PEymavALNTSGSTPKDLFEDVVEDL.EKQYHDDK..YRIKD.......SIKLKKITLTSTWTLEDLQDAISD
  757-  818 (63.24/36.64)	PQ.......ISNINFKLVYDELLERIkEKEEKEAKkrQRLADdftdllySI..KEITASSIW..EDSRQYFED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      46.75|      10|      17|     325|     334|       5
---------------------------------------------------------------------------
  325-  334 (16.99/ 9.61)	TPVVPAANSL
  344-  353 (15.05/ 7.65)	TPISTSSVSL
  363-  372 (14.71/ 7.32)	ASITPSHASV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.81|      20|      37|     383|     418|       6
---------------------------------------------------------------------------
  383-  402 (35.02/12.20)	TSATLMNVS....DNVHSQDVPNS
  419-  442 (28.80/37.02)	TVAGKVNVTiqedKTVDDEPFPYP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.17|      17|      18|     276|     292|       8
---------------------------------------------------------------------------
  276-  292 (27.71/18.59)	QAE...KMSSQGTHTDTAVA
  294-  313 (20.46/11.70)	QAHvsvNVSTVEVSSNSASA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      36.20|      11|      20|     591|     601|       9
---------------------------------------------------------------------------
  591-  601 (20.42/14.55)	ESCGFI.KVDSL
  613-  624 (15.77/ 9.61)	ERCSRLeKIDRL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16149 with Med35 domain of Kingdom Viridiplantae
Unable to open file!