<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16148

Description Uncharacterized protein
SequenceMSSNPQSSGTQVPRPPLVGSVGSQNFMQFQPGAAQQQQQQQTQSFIPAGSQQFRPVAQGQQMHFSQTMQQVPLRPPSSQAFSMSYGQPNMPVAAASTQPQHSTQGVGGFGMAPSSSYTFTPSPYGQPPNSINMSAQYQPSSQMNASVIPVGGQPWLSSGSQSIPVATHMEQPTGQQPSVMVSTISAAHAQTNPSIPSSSDWQEHTAADGRRYYYNKKTRQSSWEKPVELMTPLERADASTVWKEFATQDGRKYYYNKDTKESKWTIPEELKLAREQAEKMSSQGTHTDTAVASQAHVSVNVSTVEVSSNSASAMSGVISSPVSVTPVVPAANSLPLVALGSQSTPISTSSVSLNFVGGHSPVASITPSHASVTGTGIPADLATSATLMNVSDNVHSQDVPNSANGASIQDLEEAKKGMTVAGKVNVTIQEDKTVDDEPFPYPSKQEAKNAFKALLESANVESDWSWDQAMRIIVNDKRYGALKTLGEKKQAFNEYLGQRKKQEAEERRIKQKKAREEFTKMLEESKELTSSTRWSKAISMFEEDERFKAVERPRDREDLFESYIVELQKKEREKAQEEHQENLMEYRRFLESCGFIKVDSLWRKVQDRLEDDERCSRLEKIDRLEGFKEYIRDLEKEEDEQKKIHKEKVRRTERKNRDDFLKLMEEDVATGVLTAKTHWRDYCIKVKETPEYMAVALNTSGSTPKDLFEDVVEDLEKQYHDDKYRIKDSIKLKKITLTSTWTLEDLQDAISDEVSSPQISNINFKLVYDELLERIKEKEEKEAKKRQRLADDFTDLLYSIKEITASSIWEDSRQYFEDSQEYRSIGEESLKREIFEEYISLLLEKAKEKELKREEEKVKKEKEKEEKEKKKEKEKEKERKEKEKEREREKGKERSKKDENEDDSVDVTDVKEEKRKEKDRDRKHRKRHQSAADDLSSEKDEKEDSKKSRRHSSDRRKSRKHAYTPESDTESRHKRHKRDHRDSSRRNGAYEDLEDGEVGEDGEIR
Length1005
PositionUnknown
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.06
Grand average of hydropathy-1.094
Instability index55.44
Isoelectric point5.95
Molecular weight114782.02
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16148
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     205.58|      33|      33|     856|     888|       1
---------------------------------------------------------------------------
  520-  577 (27.05/10.25)	KMLEESKEltsstrwskaismfEEDER........FKAVERPRDRedlfesyivelQKKEREKAQ......E
  604-  633 (39.97/19.24)	KVQDRLED..............DERCS........RLEKI...DR...........LEGFKEYIR......D
  634-  657 (25.82/ 9.39)	LEKE..ED..............EQKKI........HKEKVRRTER...........KNR.............
  857-  889 (52.30/27.81)	KVKKEKEK..............EEKEK........KKEKEKEKER...........KEKEKERER......E
  890-  936 (33.30/14.60)	KGKERSKK..............DENEDdsvdvtdvKEEKRKEKDR...........DRKHRKRHQsaaddlS
  937-  961 (27.13/10.31)	SEKDEKED..............SKKSR........RHSSDRRKSR...........KH..............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.44|      37|      38|     193|     229|       2
---------------------------------------------------------------------------
  193-  229 (73.24/50.18)	P..SIPSSSDWQEHTAADGRRYYYNKKTRQSSWEKPVEL
  232-  270 (67.20/45.37)	PleRADASTVWKEFATQDGRKYYYNKDTKESKWTIPEEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     107.88|      20|      23|      28|      47|       3
---------------------------------------------------------------------------
   28-   47 (40.83/24.79)	QF.QP....GAAQQQQQQ..QT...........Q.....SFIP
   52-   83 (22.19/10.15)	QF.RP.....VAQGQQMHfsQTmqqvplrppssQ.....AFSM
   84-  113 (20.32/ 8.68)	SYgQPnmpvAAASTQPQH..ST...........QgvggfGMAP
  136-  149 (24.53/11.99)	QY.QP....SS......Q..MN...........A.....SVIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.02|      20|      24|     301|     323|       4
---------------------------------------------------------------------------
  302-  321 (32.69/20.55)	STVEVSSNSASAMS.GVIS.SP
  325-  345 (25.00/ 7.84)	TPVVPAANSLPLVAlGSQS.TP
  347-  367 (27.33/ 9.51)	STSSVSLNFVGGHS.PVASiTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      92.85|      24|      24|     768|     791|       5
---------------------------------------------------------------------------
  487-  506 (26.74/12.81)	.EKKQAF..........NE.............YLGQRKKQE...AEE
  768-  782 (17.91/ 6.23)	................YDE.............LLERIKEKE...EKE
  783-  807 (29.90/15.16)	AKKRQRLAD......dFTD.............LLYSIKEIT...ASS
  810-  856 (18.29/ 6.52)	EDSRQYFEDsqeyrsiGEEslkreifeeyislLLEKAKEKElkrEEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      54.23|      13|      20|     380|     392|       7
---------------------------------------------------------------------------
  380-  392 (20.70/16.15)	DLATSATLMNVS.......D
  398-  410 (20.49/15.90)	DVPNSANGASIQ.......D
  416-  435 (13.04/ 7.08)	KGMTVAGKVNVTiqedktvD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.62|      16|      46|     118|     134|       8
---------------------------------------------------------------------------
  118-  134 (27.58/21.21)	TFTPSPYGQPPnSINMS
  167-  182 (30.03/18.08)	THMEQPTGQQP.SVMVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.43|      29|      37|     678|     714|      13
---------------------------------------------------------------------------
  666-  707 (36.33/43.31)	EDVATGvltaktHWRDY....CIKVKEtpeymaVALnTSGSTPKDL
  709-  746 (40.10/21.01)	EDVVED.lekqyHDDKYrikdSIKLKK......ITL.TSTWTLEDL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16148 with Med35 domain of Kingdom Viridiplantae
Unable to open file!