<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16147

Description Uncharacterized protein
SequenceMYYLLHKGNKSSSRKYGGKEVLSVRAYDSSYITLGISIRNGRYYLQSSRNVLTASSLSECEEALNQGTMTAAEVFISLRSKSILRLIASIGQFLGLQVFEQGLAAVKIPKALLDGSGLLLMGFPQCGSSYFLLIQLDNNFKPLFQLLETQRDVSGKSLTGGETNQVIRSNDIDIDQMQMIEDELNLSLLDCEKLISSLPNAVGSNQNSERGHLYECESSMQIAAESPKSVFSSVVNELFELEKGTSGPPYLVQNNLSSSYNTSSLVNLGSVPVNYQKTKIGITSPKWDGSLQVSVSNVTKGAGPHPSSSLYATNNLKGLIQSSSANSLHSSPGRSPSLCKLSSSKSEQDLTSLRSTQAEAESGMDEDQMLCGSQSSRLSSLLPTAPRGTTHSTKLNELGNPTTRSVTGTPLCQTLDLGFPKDPSYSDYKHDKNPWKRSISDLLSLVPSLEGTKVSKKRKLSETALSHIPTSQHTCSSDNLSRVEGYTYGNLVAETNKGNAPSSIYVTAFLHVVRHCSLCIKHARLTSQMDALDIPYIEESGLQTPSANLWFRLPFAREVSWQHLCLRLGRPGSMYWDVKIDDQHFRDLWELQKGGTNTPWGNGVRIATASDIDSHIHFDPDGVVLTYRSVEDDSIKKLVADLSRLFNARLFALGMRKLLGVRTDDKPEEGSTNLEKKTCVGSKVGTEVPDKISEQMRKAFRIEAVGLMSLWFSFGPGVLARFVVEWESGKEGCTMHVSPDQLWPHTKFLEDFINGAEVASLLDCIRLTAGPLLALAAATRPARAGPASGPSTAMPGISPIPKQIPFPLPSSSSSNVSQSASAAPVGSLASVMGPLGSHTLHGAAMLAAGRGGPGIVPSSLLPIDVSVVLRGPYWIRIIYRKDFAVDMRCFGGDHVWLQPATPPKEGRTVGGSLPCPQFRPFIMEHVAQELNGLEPNLAGGQQAVGVLHSNSPNPSSGLQLPLSSGNRSTNAGVISRPGSLPGSQSAGINRVGNGPMTSSNLSVVSSALPLRRCTGTVVPTHVRGELNTAFIGLGDDGGYGGGWVPLVALKKVLRGILKYLGVLWLFAQLPDLLKEILSSILKDNEGALLNLDQEQPALRFFVGGYVFAVSVHRVQLLLQVLSVKRFHHQQQQPNQASAQEELAHAEISEICDYFSRRVASEPYDASRVASFITLLTLPISVLREFLKLIAWKKGLSLVQSGESAPSQKPRIELCLENHSGMPLDETSDKFSSKSNIHYDRPHSSVDFALTVVLDPAHIPHINTAGGAAWLPYCVSVRLRYSFGDNPRVIFLGMEGSHGGRSCWLQLEDWEACKHRVARTVEDKGTMAGDVSQGRLRIVADSVQSTLHLCLQAMRDASVTAASSGAM
Length1366
PositionTail
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.07
Grand average of hydropathy-0.175
Instability index45.77
Isoelectric point8.06
Molecular weight147931.54
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16147
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     428.94|     128|     153|     740|     892|       1
---------------------------------------------------------------------------
  332-  383 (53.49/14.86)	....................................................PGR....SP................SLCKL.........SSSKSEQDLTSLRSTQAEAES.GMD.EDQMLC...GSQSSRLSSLLP............................
  744-  878 (213.14/134.27)	PHTKFLEdfinGAEVASLLDCIRLTagPLLALAAATRPARAGPA.SGPSTAMPGI....SPIPKQ.IPFPLPS...SSSSNV.........SQSASAAPVGSLASVMGPLGSHTLH.GAAMLAAGRGGPGIVPSSLLPiDVSVVLR.........GPY...WIRII
  899- 1047 (162.31/69.31)	PATPPKE....GRTVGGSLPCPQFR..PFIMEHVAQELNGLEPNlAGGQQAV.GVlhsnSPNPSSgLQLPLSSgnrSTNAGVisrpgslpgSQSAGINRVGN.....GPMTSSNLSvVSSALPLRRCTGTVVPT.....HVRGELNtafiglgddGGYgggWVPLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     185.93|      48|     159|     537|     589|       2
---------------------------------------------------------------------------
  401-  435 (44.09/20.83)	..................P..TTR.SVTGTPLCqtLDLGFPkD.PSYSDYK....HDKNPW
  537-  589 (88.68/64.68)	IEESGLqtpsANLWFRL.P..FAR.EVSWQHLC..LRLGRP.G.SMYWDVKiDDQHFRDLW
  702-  743 (53.16/27.96)	IEAVGL....MSLWFSFgPgvLARfVVEW.......ESGKE.GcTMHVS...PDQ....LW
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.79|      45|      59|     221|     270|       3
---------------------------------------------------------------------------
  221-  270 (68.83/55.67)	QIAAESPK...SVFSSVVNelfeLEKGtSGP.P...YLVQNNLSSSYNTSSLVNLGS
  279-  330 (63.96/38.42)	KIGITSPKwdgSLQVSVSN....VTKG.AGPhPsssLYATNNLKGLIQSSSANSLHS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16147 with Med14 domain of Kingdom Viridiplantae
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