<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16146

Description Uncharacterized protein
SequenceMYYLLHKGNKSSSRKYGGKEVLSVRAYDSSYITLGISIRNGRYYLQSSRNVLTASSLSECEEALNQGTMTAAEVFISLRSKSILRLIASIGQFLGLQVFEQGLAAVKIPKALLDGSGLLLMGFPQCGSSYFLLIQLDNNFKPLFQLLETQRDVSGKSLTGGETNQVIRSNDIDIDQMQMIEDELNLSLLDCEKLISSLPNAVGSNQNSERGHLYECESSMQIAAESPKSVFSSVVNELFELEKGTSGPPYLVQNNLSSSYNTSSLVNLGSVPVNYQKTKIGITSPKWDGSLQVSVSNVTKGAGPHPSSSLYATNNLKGLIQSSSANSLHSSPGRSPSLCKLSSSKSEQDLTSLRSTQAEAESGMDEDQMLCGSQSSRLSSLLPTAPRGTTHSTKLNELGNPTTRSVTGTPLCQTLDLGFPKDPSYSDYKHDKNPWKRSISDLLSLVPSLEGTKVSKKRKLSETALSHIPTSQHTCSSDNLSRVEGYTYGNLVAETNKGNAPSSIYVTAFLHVVRHCSLCIKHARLTSQMDALDIPYIEESGLQTPSANLWFRLPFAREVSWQHLCLRLGRPGSMYWDVKIDDQHFRDLWELQKGGTNTPWGNGVRIATASDIDSHIHFDPDGVVLTYRSVEDDSIKKLVADLSRLFNARLFALGMRKLLGVRTDDKPEEGSTNLEKKTCVGSKVGTEVPDKISEQMRKAFRIEAVGLMSLWFSFGPGVLARFVVEWESGKEGCTMHVSPDQLWPHTKFLEDFINGAEVASLLDCIRLTAGPLLALAAATRPARAGPASGPSTAMPGISPIPKQIPFPLPSSSSSNVSQSASAAPVGSLASVMGPLGSHTLHGAAMLAAGRGGPGIVPSSLLPIDVSVVLRGPYWIRIIYRKDFAVDMRCFGGDHVWLQPATPPKEGRTVGGSLPCPQFRPFIMEHVAQELNGLEPNLAGGQQAVGVLHSNSPNPSSGLQLPLSSGNRSTNAGVISRPGSLPGSQSAGINRVGNGPMTSSNLSVVSSALPLRRCTGTVVPTHVRGELNTAFIGLGDDGGYGGGWVPLVALKKVLRGILKYLGVLWLFAQLPDLLKEILSSILKDNEGALLNLDQEQPALRFFVGYTLNFSFIVL
Length1113
PositionTail
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.07
Grand average of hydropathy-0.165
Instability index42.47
Isoelectric point8.28
Molecular weight120051.20
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16146
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     464.17|     132|     153|     740|     892|       1
---------------------------------------------------------------------------
  301-  383 (79.20/27.22)	.............................................GAGP...HPSSSLyatnnlKGL.iqsSSANSL.HSSPGRS...PSLCKL.........SSSKSEQDLTSLRSTQAEAES.GMD.EDQMLC...GSQSSRLSSLLP............................
  740-  878 (218.75/126.98)	DQLW..PHTKFLEdfinGAEVASLLDCIRLTagPLLALAAATRPARAGPA.SGPSTAM......PGI....SPIPKQ.IPFPLPS...SSSSNV.........SQSASAAPVGSLASVMGPLGSHTLH.GAAMLAAGRGGPGIVPSSLLPiDVSVVLR.........GPY...WIRII
  893- 1047 (166.22/68.85)	DHVWlqPATPPKE....GRTVGGSLPCPQFR..PFIMEHVAQELNGLEPNlAGGQQAV.......GVlhsnSPNPSSgLQLPLSSgnrSTNAGVisrpgslpgSQSAGINRVGN.....GPMTSSNLSvVSSALPLRRCTGTVVPT.....HVRGELNtafiglgddGGYgggWVPLV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.04|      30|     159|     537|     575|       3
---------------------------------------------------------------------------
  537-  575 (48.88/49.66)	IEESGLqtpsANLWFRL.P..FAREV.SWQHlclrlGRPG.SMY
  702-  736 (40.16/21.63)	IEAVGL....MSLWFSFgPgvLARFVvEWES.....GKEGcTMH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.44|      23|     159|     227|     249|       8
---------------------------------------------------------------------------
  199-  224 (34.87/18.97)	PNAVGSNQNSErghLYECESSMQIAA
  227-  249 (39.57/22.44)	PKSVFSSVVNE...LFELEKGTSGPP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16146 with Med14 domain of Kingdom Viridiplantae
Unable to open file!