<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP16139

Description Uncharacterized protein
SequenceMDNNNWRPAQAGGVAAAGEPNNNNNTSMGVEGPDWRSQLQADSRQRIVNKIMDTLKRHLPISGPEGLLELKKIAVRFEEKIYTAATSQSDYLRKISLKMLTMETKSQNNGVTNSLPQNPVASNQNPPDPASHSMQSQVLNQGHSSISLPNQPQARQQLLSQNIQNTTASGGIQSSSGLQSAFPSVTGLTPSTMPNAIGQNSTLQNISGISQNSVGQGVPSNIFSNTQRQMQGRQHPQQVVSQPNQQQPTNSQQYMYQQHQNQMMKQKLQQGNIQPSLMQSHIQPQQNLLQSTQLQPSQQSLMQMSSSLQGNQSTQQTQPSMMQSASHSGFQQNQQPSVQQSTASVLQQHTQSVLRQQPQSQQSLHQQSTGLHQQQPSIPQQQQTLAGQQQNATNIQQQKNQQLIGQQNSVTDLQQSQQQQQQGQVVMET
Length429
PositionTail
OrganismAquilegia coerulea (Rocky mountain columbine)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Ranunculales> Ranunculaceae> Thalictroideae> Aquilegia.
Aromaticity0.02
Grand average of hydropathy-0.993
Instability index78.27
Isoelectric point9.82
Molecular weight47293.56
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP16139
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     390.61|      83|      85|     146|     228|       2
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   61-  136 (100.47/30.08)	IS.....GPEG...LLELKKIAVR.....FEEKIYTAATSQSDYLR......KISLKM..................L.....TMETK..SQNNGVT.........N..SLPQN...PVAsnQNPPDPASHSMQS
  146-  228 (140.16/45.68)	ISLPN..QPQARQQLLSQNIQNTT.....ASGGIQSSSGLQSAFPS......VTGLTP..................S.....TMPNAI.GQNSTLQ.........NISGISQN...SVG..QGVPSNIFSNTQR
  240-  352 (94.27/27.65)	VSQPNqqQPTNSQQYMYQQHQNQMmkqklQQGNIQPSL.MQSHIQPqqnllqSTQLQP..................SqqslmQMSSSLqGNQSTQQtqpsmmqsaSHSGFQQNqqpSVQ..QSTASVLQQHTQS
  355-  423 (55.70/12.49)	...RQ..QPQSQQSLHQQ..................STGLHQQQPS......I....PqqqqtlagqqqnatniqqQ.....KNQQLI.GQQNSVT.........DLQQ.SQQ...QQQ..QG...........
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP16139 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDNNNWRPAQAGGVAAAGEPNNNNNTSMGVEGPDWRSQLQADSRQRIVNKIMDTLK
2) METKSQNNGVTNSLPQNPVASNQNPPDPASHSMQSQVLNQGHSSISLPNQPQARQQLLSQNIQNTTASGGIQSSSGLQSAFPSVTGLTPSTMPNAIGQNSTLQNISGISQNSVGQGVPSNIFSNTQRQMQGRQHPQQVVSQPNQQQPTNSQQYMYQQHQNQMMKQKLQQGNIQPSLMQSHIQPQQNLLQSTQLQPSQQSLMQMSSSLQGNQSTQQTQPSMMQSASHSGFQQNQQPSVQQSTASVLQQHTQSVLRQQPQSQQSLHQQSTGLHQQQPSIPQQQQTLAGQQQNATNIQQQKNQQLIGQQNSVTDLQQSQQQQQQ
1
102
56
422










Molecular Recognition Features






MoRF SequenceStartStop




1) SLKML
96
100